Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3428g00026 ATGGAGAATGATATGTACAATGTTCCACTGGACATGGCTGGCAGAAATTCTTCTGCCATGGAAGAAACTACACAGCATCTCACACCAAAGCCACTCATTTATTACTATTCATTTGACCTCAACAACCAAAACCACATCATAAATGGAATTCCAATTCTTGCTGGAGAGCAAGTTGAACCTACAAGTAATGTCCATGTAGATGGTCACTTCAGAAATCCTACTAGTATTGCTGATTCTAATTCCTTTTTTACATCACTAGGAAAGATTATTGTGGGAGATGCCTCAAATCCCATTGACAATTGTGACTTTCAAGAACATTTATCTGGAGGAAAGCCAATTACTTCTGCTTCACTTGCTGCTAGAATTGGTCTTCAAGAAAATTTAGAGAGTTCAACAACTTTGTCTCCTTCTATCTGTTCATTGGAGACATTGGGACCATATGTCTTCAATAATTGGCAAGATACTTCAAACCCTTTGTCTGCAACTTTGGGTGATCGCGGCTACGATGAAGTACCGGGTAATGGTAAGTGGAATGTCAACAAGTTTCTTAAAGCTCCAGAGGTTGATGGGACTGGGTTGTTGGCTTATTCATCCATAGTAAACCAGGATCCAAATGGATGGACATCATCAAATGTTACAAACTTGGCCAATCTTGCTTACAATTCTTCTAATTGTAGTAATGAGCTATCACTAAGTCTTGCAACATCTCCAACCCATAGCATGAATGGAACAAGGTCAGGCTTGGAGCAAGCCTCATGCAGCAGTATGGAACTGTCTATGAATTTGGGTCCTAATAAGCATGTCCAGTTTTCACCAGCAATCTTGGGATCGAAATATCTTGCTGGAATGCAAGAGATACTTACTCAAATTGCAACATATTCATTTGAAAATCTAGAAGAGATAAATTATTCAGCTGATGGTGTTAGGCAAGGAGGAGATAAATCAACTTCAGCTTTCATACCCAAGAGAAGGATAGCAATAAATCACAATGAAAATTCTATGTTTGAAGCACATTTAGAATCTCCATTGCAAAGACATGCAGCTGAATCAAACAAATCCCAACTGCTTATGCTTCTACAGCTGGTGGACAATCGATATAGTCAGTGTTTGGATGAGATTCATACTGTTGTATCCGCATTCCATGCTGCTACTGAGCTGGACCCACACATGCATGCACATTTTGCTCTTCAAACAATCTCTCTCCTATACAAGGACTTGCAAGAGAGGATTAGCTATCATATTCTTGCAATGGGATCGAATTTGAACAGCTCATGCTCAGAAGAGGAGAAGGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGACTCTCCAACAGTTGAAAAAAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCTGAAAGATCTGTCTCAGTTTTACGTGCTTGGATGTTTCAGAATTTCCTCCACCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTTAAAAGTGGGTTGACGAGAAGCCAGGTATCTAACTGGTTTATTAATGCACGTGTTCGGCTATGGAAACCTATGATTGAGGAAATGTACGCCGAAATTAATAGAAGAAAAGCTCTTCGAAATGAAGAAGGAATCGAGAGCAGTCAGAGAAGCAGGATAAGAATGAACAATCAAATGTTTAATATCAATTGA 1665 0.3958 MENDMYNVPLDMAGRNSSAMEETTQHLTPKPLIYYYSFDLNNQNHIINGIPILAGEQVEPTSNVHVDGHFRNPTSIADSNSFFTSLGKIIVGDASNPIDNCDFQEHLSGGKPITSASLAARIGLQENLESSTTLSPSICSLETLGPYVFNNWQDTSNPLSATLGDRGYDEVPGNGKWNVNKFLKAPEVDGTGLLAYSSIVNQDPNGWTSSNVTNLANLAYNSSNCSNELSLSLATSPTHSMNGTRSGLEQASCSSMELSMNLGPNKHVQFSPAILGSKYLAGMQEILTQIATYSFENLEEINYSADGVRQGGDKSTSAFIPKRRIAINHNENSMFEAHLESPLQRHAAESNKSQLLMLLQLVDNRYSQCLDEIHTVVSAFHAATELDPHMHAHFALQTISLLYKDLQERISYHILAMGSNLNSSCSEEEKEWSVETSFIQKQWTLQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEINRRKALRNEEGIESSQRSRIRMNNQMFNIN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3428g00026 554 Pfam Homeobox KN domain 472 511 IPR008422 GO:0003677|GO:0006355
Gabi3428g00026 554 CDD homeodomain 455 516 IPR001356 GO:0003677
Gabi3428g00026 554 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 232 537 - -
Gabi3428g00026 554 SMART prehox3 268 412 IPR006563 -
Gabi3428g00026 554 ProSiteProfiles 'Homeobox' domain profile. 452 515 IPR001356 GO:0003677
Gabi3428g00026 554 SMART HOX_1 455 519 IPR001356 GO:0003677
Gabi3428g00026 554 Pfam Associated with HOX 274 411 IPR006563 -
Gabi3428g00026 554 SUPERFAMILY Homeodomain-like 457 523 IPR009057 -
Gabi3428g00026 554 Gene3D - 449 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3428g00026 Gabi-Chr3428 355377 358759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3428g00026 227 528 Homeobox Transcription Factor Family AT4G32980 57.235 3.42e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi3428g00026 POX 7.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3428g00026 - - gmx:100812648 834.328