LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3428g00002	ATGGAGGAATATACTAATAATAATCACCTCAGCGAAAACACAGGTCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTAGTGTTGTTGGTGGTGGTGGTTCCGGCGTAGGAAACCATCATCATAATCATCATCACCAGCATCATCATCAGGTTCCCATCAACACCTTTCATCTTCAATCAAGTGGTTCAGATCACTGCTTCCAATCCGATCAGGTTCCACACCCTGCTGTGAAAACCGAAGCCAGCACCTCGCAGCTTCACACTCCGATTTTCCACTATCCTTTAATGAGAGGAAACCTTCACACCACGATGCATCATCAGCAACAAGGAAGCCAAAGCTCTAGCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCATCCTCAATACTCCAATCTCTTAGAAGCTTACATGGATTGCCATAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTCTGGTTGCGGCGAAGCAAGAATTTGAGGCACGGGGGCAGCGATCTTCAGTTAGCTCCAGGGAAACTTCCAAAGACCCAGAACTTGACCAATTCATGGAAGCTTATTATGACATGCTTGTGAAGTATCGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGCGGAGGATAGAAACTCAACTAAACATGCTTTGCAATGGACCCGTTCGGGTTTTCTCAGATGATAAATGTGAAGGCGTTGGTTCATCGGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTTAAAAACCACTTGTTGAGGAAGTATAGTGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGAAAATTGCCTAAAGATGCTAGGCAAAAACTACTTAATTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAAGCAACCGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGCCTTCATCCGCAAAACGCAACTCTCTATATGGATGGTCACTACATGGCTGATGGTCACTATCGTCTAGGGCCATGA	1146	0.4433	MEEYTNNNHLSENTGPSPSPRPNFLYSSVVGGGGSGVGNHHHNHHHQHHHQVPINTFHLQSSGSDHCFQSDQVPHPAVKTEASTSQLHTPIFHYPLMRGNLHTTMHHQQQGSQSSSEVEAIKAKIIAHPQYSNLLEAYMDCHKVGAPPEVVARLVAAKQEFEARGQRSSVSSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRVFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMADGHYRLGP	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3428g00002	381	CDD	homeodomain	295	347	IPR001356	GO:0003677
	Gabi3428g00002	381	SMART	KNOX1_2	119	163	IPR005540	GO:0003677\|GO:0005634
	Gabi3428g00002	381	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	62	353	-	-
	Gabi3428g00002	381	FunFam	Homeobox protein knotted-1-like 2	288	350	-	-
	Gabi3428g00002	381	Pfam	Homeobox KN domain	303	342	IPR008422	GO:0003677\|GO:0006355
	Gabi3428g00002	381	ProSitePatterns	'Homeobox' domain signature.	321	344	IPR017970	GO:0000981\|GO:0006355
	Gabi3428g00002	381	Pfam	ELK domain	263	284	IPR005539	GO:0003677
	Gabi3428g00002	381	Gene3D	-	288	350	-	-
	Gabi3428g00002	381	SUPERFAMILY	Homeodomain-like	284	358	IPR009057	-
	Gabi3428g00002	381	Pfam	KNOX2 domain	175	221	IPR005541	GO:0003677\|GO:0005634
	Gabi3428g00002	381	SMART	ELK_2	263	284	IPR005539	GO:0003677
	Gabi3428g00002	381	MobiDBLite	consensus disorder prediction	232	260	-	-
	Gabi3428g00002	381	MobiDBLite	consensus disorder prediction	1	24	-	-
	Gabi3428g00002	381	ProSiteProfiles	'Homeobox' domain profile.	283	346	IPR001356	GO:0003677
	Gabi3428g00002	381	SMART	KNOX2_2	171	222	IPR005541	GO:0003677\|GO:0005634
	Gabi3428g00002	381	ProSiteProfiles	ELK domain profile.	263	283	IPR005539	GO:0003677
	Gabi3428g00002	381	SMART	HOX_1	285	350	IPR001356	GO:0003677
	Gabi3428g00002	381	Pfam	KNOX1 domain	120	162	IPR005540	GO:0003677\|GO:0005634
	Gabi3428g00002	381	MobiDBLite	consensus disorder prediction	1	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3428g00002	Gabi-Chr3428	52056	56673	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3428g00002	64	381	Homeobox Transcription Factor Family	AT4G08150	70.336	3.14e-158	449

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Gabi3428g00002		KNOX2	2.8e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3428g00002	-		-	gmx:100807602	647.506