Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3428g00001 ATGGGTTTTGATGATACATCTAACTCGGGGCTTCGACTTGGTCTTGGTCTTGGTCCTGAGAATTGCATGAAGAATGAAAGCCAGAAGAAAAAGGTGGAGAATAATCCATCAAAATGTAATAAGGCATACCCATCGCTTACGCTAGGACCACCTGATGATGATGAAGAAGAAGAAGAAGCAAATAATCAACCATCTTCAAAGACTGAATCTTACGAATATTTACGTCCCCAAGTCTCTTCTCCAAGCGCAGTGTCTTCATTTTCTAACTCATGTAGCATCAAGAGGGAGCGAGATCAGGTTTTAAATGAAGAATTTGAGGTAGAGACAGAGAAGGTTCCAACAACAAGGGGAGGCGATGTTGATGAAGATGGTAATCCTAGGAAGAAACTTAGGCTAACCAAAGAACAATCCGCAGTCTTAGAGGAAAATTTCAGAGATCATTCTTCTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGAAAGTTAAATCTGCGGGCGAGACAAGTAGAAGTGTGGTTTCAAAACAGGAGAGCTAGGACAAAACTGAAACAAACCGAATCGGATTGTGAATTACTGAAGAAGTATTGCGAAACCCTGACAAAGGAGAACAAGAGGCTGGAAAAGGAGCTGCAAGAACTTAAAACAATGCAAACAACGTCAGCAGTACCCTTTTATATGCAGATTCCTGCAGCCACACTTACCATATGCACTTCCTGTGAGAGAATTTGTGGTGGCAGTAGTGGCGGTAATAGCAACGGTTCATCAGCCACGACAACGTCGCTTATAATTGACTCAAAGGCCCATCATCACTTCTATAAAAATAACTATCCATTCCCCCACTCATCATCTGCAGCATGCTAG 861 0.4216 MGFDDTSNSGLRLGLGLGPENCMKNESQKKKVENNPSKCNKAYPSLTLGPPDDDEEEEEANNQPSSKTESYEYLRPQVSSPSAVSSFSNSCSIKRERDQVLNEEFEVETEKVPTTRGGDVDEDGNPRKKLRLTKEQSAVLEENFRDHSSLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTESDCELLKKYCETLTKENKRLEKELQELKTMQTTSAVPFYMQIPAATLTICTSCERICGGSSGGNSNGSSATTTSLIIDSKAHHHFYKNNYPFPHSSSAAC 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3428g00001 286 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Gabi3428g00001 286 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gabi3428g00001 286 Coils Coil 182 219 - -
Gabi3428g00001 286 MobiDBLite consensus disorder prediction 1 91 - -
Gabi3428g00001 286 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gabi3428g00001 286 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Gabi3428g00001 286 CDD homeodomain 126 184 IPR001356 GO:0003677
Gabi3428g00001 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 257 - -
Gabi3428g00001 286 SMART HOX_1 125 187 IPR001356 GO:0003677
Gabi3428g00001 286 MobiDBLite consensus disorder prediction 64 91 - -
Gabi3428g00001 286 SMART halz 183 228 IPR003106 GO:0006355|GO:0043565
Gabi3428g00001 286 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355|GO:0043565
Gabi3428g00001 286 Gene3D - 119 189 - -
Gabi3428g00001 286 MobiDBLite consensus disorder prediction 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3428g00001 Gabi-Chr3428 13983 15886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3428g00001 1 284 Homeobox Transcription Factor Family AT2G22800 48.148 5.34e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3428g00001 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3428g00001 K09338 - gmx:100797650 389.808