Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3425g00001 ATGTATCCAACACGGTCTGGCCAAGATAGCCCTGTTTCCGGGCAGGTGCGTACAAGTGATAAGATCAAGTCAAGGCCAAACATTTATGGCCGACCATTCATGTATTACAACTCAAATCTTAGGCACACCAGGAAAAGCAAGATGAAGACAAGGACAACAGCTTCACAGATTGCCAAGATGTTGCGTCCAGTGAATCGGAAAGGACAAGATTTGAATACTAATTCTGGCTCTGCCAACCTTAGGCGTTCAACTAGGAAGAGAAGGCTTAGTGTAAATCTTGAAGATTTCACAGACAGCTCTGGAGCTGAGGATGAAGACTTAATGAGACCTGCATATCAACCATTGAGAAACCAGATTAGCATTAGCATCAGCCGGGATGATTTGATGTCTACTAAACGCAAAAGAGCAATGGAGAAACCTACACCTCGGCGTGAAGGTCTACGACCACGTCGCTCAAAGGCTGGCGCAAGAGAACGATTAATTTTAGAATCAGATGATGAGCAAGAGCTTTCAGAAGAGAAGGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGATGATGATCAAAATGAGATTGAGGTGGACACTGAGGGTGAGGATGAAGGCAAGGATGAAGGTGATGAAGATGGTGATGATGAAGAAGATGGAGAAGAGAAGGATGGAAGAAGACGCTATGATCTTCGAAATCGTTCAGATGTCTGCAGGTTCTCTATGGAGGAAGGGAAGGCCCGGCAAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAAGTCAGTAGGGATGTAAGGAAGGGTGGTTCACATGTTCATAAGCGTCATCGCATAACAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGCTAGACCGAGGCTCTGCTATTCCATGGGGGCGAGGTGGAAGCAGATCTGGCCCACCTTGGCTTTTTGGGGGCTTAGACATGCATGGAACATCTTGGGGATTAAATCTTACTGCATCAGGTTGGGGTCACCAGGGTGATGCTTTGGTTACTCTAACTTCTGGGATTCAAACTGCTGGACCAAGTTCTAAGGGAGGAGCAGATATCCAACCCTTACAGGTTGATGATAATGTTAGTTTTGAAGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATACCCAGATTTCTTTGCAAGTTACCACATTACTCCACCTAGAGGGGTGTTGTTATGTGGACCCCCTGGTACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAGAAAGTTAGCTTTTACATGTGCAAGGGAGCAGATGTACTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAACGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACATGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAAAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTTGGTTACTGTG 1759 0.4417 MYPTRSGQDSPVSGQVRTSDKIKSRPNIYGRPFMYYNSNLRHTRKSKMKTRTTASQIAKMLRPVNRKGQDLNTNSGSANLRRSTRKRRLSVNLEDFTDSSGAEDEDLMRPAYQPLRNQISISISRDDLMSTKRKRAMEKPTPRREGLRPRRSKAGARERLILESDDEQELSEEKVEQDETENGNDVEENDADDDQNEIEVDTEGEDEGKDEGDEDGDDEEDGEEKDGRRRYDLRNRSDVCRFSMEEGKARQRSPRRVLHQGMGTKVSRDVRKGGSHVHKRHRITRPEDSDDSLLVDELDRGSAIPWGRGGSRSGPPWLFGGLDMHGTSWGLNLTASGWGHQGDALVTLTSGIQTAGPSSKGGADIQPLQVDDNVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMCKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEAHAEILDIHTRKWKHPPPKELKKELAASCVGYC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3425g00001 586 Gene3D - 372 549 IPR027417 -
Gabi3425g00001 586 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3425g00001 586 FunFam ATPase family, AAA domain-containing 2 372 555 - -
Gabi3425g00001 586 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3425g00001 586 Gene3D - 550 585 - -
Gabi3425g00001 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 584 IPR027417 -
Gabi3425g00001 586 MobiDBLite consensus disorder prediction 127 164 - -
Gabi3425g00001 586 MobiDBLite consensus disorder prediction 62 231 - -
Gabi3425g00001 586 PANTHER AAA DOMAIN-CONTAINING 43 586 IPR045199 -
Gabi3425g00001 586 MobiDBLite consensus disorder prediction 165 222 - -
Gabi3425g00001 586 ProSitePatterns AAA-protein family signature. 519 537 IPR003960 GO:0005524|GO:0016887
Gabi3425g00001 586 SMART AAA_5 410 551 IPR003593 GO:0016887
Gabi3425g00001 586 Pfam ATPase family associated with various cellular activities (AAA) 414 549 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3425g00001 Gabi-Chr3425 8 3359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3425g00001 374 585 Calmodulin-binding Proteins AT3G56690 44.651 5.52e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3425g00001 K22531 - gmx:100787765 953.355