Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3423g00001 ATGGAGACACCAAAGGGGAACCAAATGAACACTCCCTCCCCTAACTTAGAGGATTCACCTGTGTTCAACTATATCAATAATTTATCTCCTTTGAAGCCCCTTAAGTCTCTTAACAATATTCAGACGTTCAATTCACTCATCTTTTCATCCCCTCCTCGTGTTTTCGCATCACCCCATGCTAGCTGTTTCAACTCATTTGGCACATCAAAGGCTAAGGTTTCTTCAGAATATGGAAATGATGTTTACTCAAGTGATCTGGCTCTTGCAGATTCTACTCATGCGCATCATTGCTCAAGAGAATTGTATGAAATTACCACCAATAATGATGGGATAATGCACGTTGTTGATTCAGTTGCTTCTGGTTCTGAACTTGATATCCAAGATCATTGTTTTGAGCCAATAGCAGCCACAGTCACAGACCATACACATCAGGACAATCTTGCCAATGTTGCTTTGATGATGAGCAATCCAAATGCGAAGACAAATGATGAGCTTGTTTTGCACCATGGTTCATGGATACGCTGTATAGACTTTGAAGTGGCCAGTGAGCAAAGAAATAAGAATTCAAACACTACATCACAGTATGTTGAGAAGAATGTTGCTAATGAAAACCATCTTCTTCTTCCTACGAATTGCAATGGGAATTCACAAAGTTTCACTTTGCCAGAAATTAGTTCACACTTGAACACACTTCCAAGCTTAAAAGATTACAAAGGTGTCACTTCTTCCTTCAATCTCTCTATAAGCCAAGAACATGAGCATTCACAATTGGTAACTCAATCATCCAAAAGAGAATTGGATCCACCAGAGAATCAAGTTCAACCAGCAGAAGAAGATTTCAATCAGAACAGCTCCAACAAGAAAAGGCGAAAAATGGAAGAAACTGATCAGGGATGCAAACGTTGCAATTGCAAGAAATCAAAATGTTTGAAGCTTTTTTGTGAGTGCTTTGCTTCTGGTGTCTATTGCTTAGAACCTTGTGGTTGTAAGGATTGCTTCAACAAACCAATTCATGAAGATACTCTTATTCTAACTCGAAAGAAGATTGAATCTCAAAACCCAAATGCATTCGATCCTAAAGTCATTGGAACCGGGGATGATGATCAGAAAAATACTCCAGCATCAGGTTCAGCTCGACATAAAAGAGGATGCAGCTGCAAGAAATCACGTTGCTTGAAGAAATATTGTGAATGTTTTCAGAATTGTGTTGGTTGTTCTATTAATTGCAGATGTAAAGGTTGCAAGAACACATATGGTAGAAAGAATATAAAGGATGGTTCTCCTACAATAGGAATAGAAGCTGATACAGAAGAACCACAAACATGTGAAAAAATGACAG 1339 0.3854 METPKGNQMNTPSPNLEDSPVFNYINNLSPLKPLKSLNNIQTFNSLIFSSPPRVFASPHASCFNSFGTSKAKVSSEYGNDVYSSDLALADSTHAHHCSRELYEITTNNDGIMHVVDSVASGSELDIQDHCFEPIAATVTDHTHQDNLANVALMMSNPNAKTNDELVLHHGSWIRCIDFEVASEQRNKNSNTTSQYVEKNVANENHLLLPTNCNGNSQSFTLPEISSHLNTLPSLKDYKGVTSSFNLSISQEHEHSQLVTQSSKRELDPPENQVQPAEEDFNQNSSNKKRRKMEETDQGCKRCNCKKSKCLKLFCECFASGVYCLEPCGCKDCFNKPIHEDTLILTRKKIESQNPNAFDPKVIGTGDDDQKNTPASGSARHKRGCSCKKSRCLKKYCECFQNCVGCSINCRCKGCKNTYGRKNIKDGSPTIGIEADTEEPQTCEKMT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3423g00001 446 MobiDBLite consensus disorder prediction 354 381 - -
Gabi3423g00001 446 ProSiteProfiles CRC domain profile. 298 419 IPR005172 -
Gabi3423g00001 446 MobiDBLite consensus disorder prediction 254 290 - -
Gabi3423g00001 446 MobiDBLite consensus disorder prediction 254 268 - -
Gabi3423g00001 446 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 90 IPR044522 GO:0003700
Gabi3423g00001 446 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 382 417 IPR005172 -
Gabi3423g00001 446 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 300 335 IPR005172 -
Gabi3423g00001 446 SMART CXC_2 297 338 IPR033467 -
Gabi3423g00001 446 SMART CXC_2 379 420 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3423g00001 Gabi-Chr3423 3908 6435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3423g00001 16 427 CPP Transcription Factor Family AT4G14770 39.479 2.97e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi3423g00001 TCR 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3423g00001 - - gmx:100804447 390.578