Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3421g00001 ATGGAATCTCAGGCTACTCAACTCAATTTTGTTGTTGGATCTCATATCTGGATTGAGGACCCTGATGAAGCTTGGATAGATGGAGAAATCCTGGAATCTAATGATGAAGGGATCACAGTAAGCAATGCATCAGGGACGAGGGTTGTGAGCAAATCAGTTAATATCTATCCCAAAGATCCTGAATTCCCACCAAACGGTGTGGAAGATATGACAAGACTGGCATATTTGCATGAACCAGGGGTACTTCAAAATTTGCAACTTCGATATGACTTAAATGAAATATATACATACACAGGAAATATTTTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCCAGTGAAACAATGGCACAGTATAAAGGTGCAGCTTTCGGTGAGCAGAGCCCCCATCCTTTTGCAATTGCAGCTCATGCATATAGGAAGATGATAAACGAAGAAACAAGTCAATCTATTTTGGTTAGTGGGGAGAGTGGAGCAGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCTTATATGGGAGGGAGAGTAGCAACTGAGGGACGACGGTCAGTGGAGCAACAAGTTCTGGAGTCCAATCCAGTTTTAGAAGCATTTGGCAATGCAAAGACTGTTAGGAACAACAATTCTAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCCATCAGAACTTATTTGCTGGAACGATCCCGTGTCTGTCAAGTTTCTGATCCTGAGAGAAATTACCATTGCTTTTATATGCTTTGTGCTGCACCAAAAGAGGATACAAATAAGTACAAATTGGGAGATCCAAGAACATTTCGTTACCTCAATCAATCGAATTGCATTGAGCTGGATGGGCTGGATGATTCTAAGGAGTACCTTGCAACTAGGAGAGCCATGGATGTAGTTGGGATCAGCTCTGATGAGCAGGATGCTATATTTCGAGTAGTAGCTGCAGTACTTCATTTGGGAAACATTGAATTTGTTAAGGGAGTGGATGAAGAGATGGATTCCTCTCAACCAAAGGATGAAGAATCCCATTTCCACCTAAAAACTGCAGCTGAACTTTTTATGTGTGATGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGAGGCCATAACAAAATGGCTTGATCCAGTTTCTGCAGCTCTCAGTAGAGATGCATTTGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGAACAAGATTAACAACTCTATTGGGCAAGATCCAGATTCAAAGAGCTTAATTGGGGTTCTAGATATTTATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATCAAAAGGAAGAGATTGATTGGAGTTACATAGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAAAAGAAACCTGGCGGCGTTATTGCTCTTCTGGATGAGGCTTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACATTTAAAGATAATAAACGCTTCAGCAAGCCAAAGTTGTCTCGTACAGACTTCACCATTAACCACTATGCTGGTGATGTCACATATCAAACTGATCATTTCCTTGACAAAAATAAAGACTATGTTGTTCCAGAGCATGCTGCTTTACTCAGTGCTTCGAAGTGCTCCTTTGTTTCAGGGTTGTTCCCACCTTTACCCGAGGAAACTACAAAGTCAACGAAGTTCTCTTCTATAGCCACTCAGTTTAAGCAACAACTGCAAGCTTTGCTTGAAACACTGAGTGCTACTGAGCCACACTACATTCGTTGTGTAAAGCCAAATAATCTTCTTAAGCCAGGGATATTCGAGAACAACAATGTGCTGCAGCAGCTTAGGTGTGGGGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGAACTTTGATGAATTTGTTCAGCGTTTTACTATCTTGGAACCTAAGGTTCTGAAAGCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTAGATAGAGCGAACCTTAAAGATTATCAGATTGGAAAGACCAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCGTGTCGTGCTGTGGTCTTAGGAAGATCCGCAAGCATTATTCAGAGAAACGTTCGCACATTTATTTGCCGGAAACACTTCTTGTTATTGCAGTTGTCTGCCATAGAATTACAAAGGGTGGTTAAAGGACAACTTGCACGCCATCAGTATGAATGCATGAGGAGGGAAGATGCTTCTTTGAAAATCCAAAAATACTTCCGCATGTATCTTTCCAGAAATTCTTACAAAACTATTTATGCCACTGCTGTTGATATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGACCTTAGATTCAGGAAGCAGACACATGCTGCAGTTATTATTCAGGGTCACTATAGAGGTCATTCAGCTCGTACTCGTTTCAAAAGCCTAAAGAAAGCAACAATTGCTGTGCAGTGTTCCTGGAGAAGAACACTTGCACGTAGAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAGCCAAGGCTCTTGAAGCTGCGAAAAATAATCTGGAAAAGCAAGTCGAAGAACTAACTTCATGTCTAGAAACAGAGAAGAGAATGAGGGGTGATATTGAGGAAGCCAAGACACAGGAAAATGAAAAATTACAATGTGCTTTGCAAGAGATGGAGCTTCAGTTCCAAGAAACTACGGCAATGCTCATTAAGGAACGAGAGGCTGCCAAGAAAGGAGCTGAGCAAACTCCAAGAACACAGGAGATTTCTGTTAATGCTACTGACAATGAATTGATCAATAAGCTTACTGCAGAAAATGAACAACTTAAGGAACAGGTTAATTCATTGGAAAAGAAAATTGATGAAGCAGAGAAGAAATATGAAGAAAGTAGCAGGCTTAGTGAAGAGCGCATGAATCAAATTATAGAGACAGAATCAAGGATGATTGATCTAAAGACAAAAATGCAGAGGCTTGAAGAAAAACTCTCTGATATGGAAACTGAGAATCAAATTTTGCGGCAACAAGGCTTGTTGAGTTCATCATCTAGGAGAATGTCAGGAAAGTTTTCATCTGCTGCAGTTCCGGCACCAGCAAAAACATTCGGTTCAGAGGTTATCAGGAGATCTCACATGGAGAAGCACCAAGAAAGTGTAGATGCTCTTTTCAAATGTGTGACAAAAGATCTTGGGTTCTCCGAAGGAAAACCTGTTGCAGCATTTACCCTTTATAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAGACAAGTATATTTGATCGTCTTATTCAGCTGATTGGTTCTGCAATAGAGGATCAGGACAATAATGATTGTATGGCTTATTGGTTATCAAACACATCTGCTTTGTTCTTCCATCTTCAGAGATGTCTAAGAGTACCAGCACGGAAACCACCTACCCCAACAGGGTTTTTTGGGAGGATGACCCAGGGTTTCCGGTCTTCCAATAGTCTATCCAGTAATGCACTTGATTTAGAACATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTCAAGCAGCAGCTTGCAGCTTATGTGGAAAAGATTTACGGAATCATTCGAGAAAATTTGAAGAAAGACTTGTCACCTCTGCTTTCTTCTTGCATTCAGGCGCAGACAACATCAAATGACAACAGCAAACCAGATGCTTCTTGGCTCAGCATCATTGAGTGCCTTAATAGATTTCTCAAGATTCTGAAAGAAAATTATGTTCCTCCTCTTCTAGTTCAGAAGATATTTAATCAGGTTTTACACTACATCAATGTGGAAATCTTTAATAGCATTCTTTTGCATCAAGAATGCTGCACATTCAGCAATGGAGAATATGTAAAATCAGGGTTGGCTGAGTTAGAACTATGGTGTAATGAAGCAACAGAGGAGTATGTTGGCTCATCTTTGGATGAACTCAGACATGCGCGGCAAGCAGTTAGACTCTTGGTTGCACAAGAGAAGGATGGACTATCCTATGATGATCTTACGAATGACCTGTGCCCTGTCTTGAGTGCTAATCAGCTTTATAGAATATGTACACTTTACGAGGATGGCAATGACAATACTCTAAGTGTATCATCAGATGTCACTACTAGGTTGAAGCTTTTGATGACAGATGATGCAGATGATGATAACAAATCCTTCTTGTTGGAAGACAATTCAAGTACTCCTACAATAGTTGAAGAGATTTCTAGTTCCCTTCAAGATAAGACCATTCCAAAAGTAAAACCTCCTGCAGAACTTCTTGAGAATGCATCCTTCCAATTTTTACATGATTATTCTTAG 4440 0.4016 MESQATQLNFVVGSHIWIEDPDEAWIDGEILESNDEGITVSNASGTRVVSKSVNIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQLRYDLNEIYTYTGNILIAVNPFQRLPHLYASETMAQYKGAAFGEQSPHPFAIAAHAYRKMINEETSQSILVSGESGAGKTESTKMLMHYLAYMGGRVATEGRRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDTNKYKLGDPRTFRYLNQSNCIELDGLDDSKEYLATRRAMDVVGISSDEQDAIFRVVAAVLHLGNIEFVKGVDEEMDSSQPKDEESHFHLKTAAELFMCDEKSLEDSFCKRVMVTRGEAITKWLDPVSAALSRDAFAKIVYSRLFDWIVNKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYQKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDHFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLPEETTKSTKFSSIATQFKQQLQALLETLSATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFTILEPKVLKACPDEMTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAVVLGRSASIIQRNVRTFICRKHFLLLQLSAIELQRVVKGQLARHQYECMRREDASLKIQKYFRMYLSRNSYKTIYATAVDIQTGMRGMAARNDLRFRKQTHAAVIIQGHYRGHSARTRFKSLKKATIAVQCSWRRTLARRELRKLKMAAKEAKALEAAKNNLEKQVEELTSCLETEKRMRGDIEEAKTQENEKLQCALQEMELQFQETTAMLIKEREAAKKGAEQTPRTQEISVNATDNELINKLTAENEQLKEQVNSLEKKIDEAEKKYEESSRLSEERMNQIIETESRMIDLKTKMQRLEEKLSDMETENQILRQQGLLSSSSRRMSGKFSSAAVPAPAKTFGSEVIRRSHMEKHQESVDALFKCVTKDLGFSEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSAIEDQDNNDCMAYWLSNTSALFFHLQRCLRVPARKPPTPTGFFGRMTQGFRSSNSLSSNALDLEHQVDAKYPALLFKQQLAAYVEKIYGIIRENLKKDLSPLLSSCIQAQTTSNDNSKPDASWLSIIECLNRFLKILKENYVPPLLVQKIFNQVLHYINVEIFNSILLHQECCTFSNGEYVKSGLAELELWCNEATEEYVGSSLDELRHARQAVRLLVAQEKDGLSYDDLTNDLCPVLSANQLYRICTLYEDGNDNTLSVSSDVTTRLKLLMTDDADDDNKSFLLEDNSSTPTIVEEISSSLQDKTIPKVKPPAELLENASFQFLHDYS 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3421g00001 1479 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 11 60 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 PRINTS Myosin heavy chain signature 152 177 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 PRINTS Myosin heavy chain signature 488 516 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 PRINTS Myosin heavy chain signature 200 227 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 PRINTS Myosin heavy chain signature 95 114 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 PRINTS Myosin heavy chain signature 435 463 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 790 888 IPR027417 -
Gabi3421g00001 1479 Coils Coil 922 949 - -
Gabi3421g00001 1479 CDD MYSc_Myo11 79 726 IPR036018 -
Gabi3421g00001 1479 Pfam DIL domain 1300 1402 IPR002710 -
Gabi3421g00001 1479 FunFam unconventional myosin-Va 791 839 - -
Gabi3421g00001 1479 Gene3D Myosin VI head, motor domain, U50 subdomain 316 607 - -
Gabi3421g00001 1479 Gene3D - 673 736 - -
Gabi3421g00001 1479 ProSiteProfiles IQ motif profile. 814 841 IPR000048 GO:0005515
Gabi3421g00001 1479 Pfam Myosin N-terminal SH3-like domain 13 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 ProSiteProfiles Myosin motor domain profile. 65 738 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 Coils Coil 873 917 - -
Gabi3421g00001 1479 ProSiteProfiles IQ motif profile. 837 866 IPR000048 GO:0005515
Gabi3421g00001 1479 ProSiteProfiles IQ motif profile. 764 793 IPR000048 GO:0005515
Gabi3421g00001 1479 Gene3D - 256 314 - -
Gabi3421g00001 1479 SMART DIL_2 1299 1406 IPR002710 -
Gabi3421g00001 1479 Gene3D - 445 629 - -
Gabi3421g00001 1479 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Gabi3421g00001 1479 PANTHER MYOSIN 57 843 - -
Gabi3421g00001 1479 Pfam Myosin head (motor domain) 67 726 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 Pfam IQ calmodulin-binding motif 862 881 IPR000048 GO:0005515
Gabi3421g00001 1479 Pfam IQ calmodulin-binding motif 838 858 IPR000048 GO:0005515
Gabi3421g00001 1479 Pfam IQ calmodulin-binding motif 791 810 IPR000048 GO:0005515
Gabi3421g00001 1479 Pfam IQ calmodulin-binding motif 743 761 IPR000048 GO:0005515
Gabi3421g00001 1479 FunFam Myosin 2 316 431 - -
Gabi3421g00001 1479 Coils Coil 973 1056 - -
Gabi3421g00001 1479 ProSiteProfiles Dilute domain profile. 1142 1424 IPR002710 -
Gabi3421g00001 1479 ProSiteProfiles IQ motif profile. 860 889 IPR000048 GO:0005515
Gabi3421g00001 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 789 IPR027417 -
Gabi3421g00001 1479 Gene3D Kinesin motor domain 68 668 IPR036961 -
Gabi3421g00001 1479 FunFam Class V myosin 445 586 - -
Gabi3421g00001 1479 FunFam unconventional myosin-Va 840 887 - -
Gabi3421g00001 1479 SMART iq_5 836 858 IPR000048 GO:0005515
Gabi3421g00001 1479 SMART iq_5 859 881 IPR000048 GO:0005515
Gabi3421g00001 1479 SMART iq_5 763 785 IPR000048 GO:0005515
Gabi3421g00001 1479 SMART iq_5 740 762 IPR000048 GO:0005515
Gabi3421g00001 1479 SMART iq_5 788 810 IPR000048 GO:0005515
Gabi3421g00001 1479 SMART MYSc_2a 59 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3421g00001 1479 FunFam Myosin heavy chain 256 311 - -
Gabi3421g00001 1479 CDD MyosinXI_CBD 1093 1446 IPR037975 GO:0007015
Gabi3421g00001 1479 Gene3D - 839 889 - -
Gabi3421g00001 1479 Gene3D - 792 838 - -
Gabi3421g00001 1479 Gene3D - 741 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3421g00001 Gabi-Chr3421 5031 26799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3421g00001 8 1476 Myosins gene family AT5G43900 64.640 0.0 1971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3421g00001 K10357 - jre:108980231 2148.63