Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3420g00001 ATGACCCAAGACAACAGTAAAGGAGGCCAAGTTTTGCTAGATAAGATTTTGCTTAATAGTTTTATTGGCTTAAGTGGAAAAATTCAGTTCACTGACCAAAAGTTAGCTCCTTCACATACTTTTCAGATCATCAATGTGATAGGGAATGGTTACAAGGAAATTGGATTCTGGTCAGATGGACTAGGTTTCTCAAATAGTATTGGCCAAAATGCTACTTATAGTTGTTCAATGAAGGAACTGGGACAACTTTTATGGCCAGGAAGACCTTGGGACACTCCAAGAGGATGGGCCCTGCCTACAAGTGATAAACCACTAAGAGTTGGGGTCCCTGCTTTGGCCACATTGAAACAATTTATAAATATAACTCAAGATCATTCTGAAAATACTACCTCCTTCCAGGGATTTACTATTGATCTTTTTAGAGCAACTGTGGAGTTGTTGCCCTACCATTTGCCATACAAATTATATGCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTTTATTTAAAGAATTTCGATGCAGCGATTGATGTAACAATAATTTCATATCGATATCAGTATGCTGAATTCACTCAGCCTTACACTGATCCGGGAGTGGTGATGGTAGTGCCCATTAAGTCAAAAGCAGGACATAGAGCTTGGTTATTCGTGAAGCCATTTACAAAGACCATGTGGATTCTAATAGCAGCCATGATTATCTACAATGGATTTGTTCTATGGATGTTAGAGAGACACCATTGGCCTGAACTTAAGGGTTCCATGCTCAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTCATCAGCTTTAATGGATCCTTCTTGCAAAAATATCCGCAGGAAGTGTTACACTTCCAACCTGCAAAAATCAAGCAATTTAGCTCACTTGAAGAGTTTGCAGAAGCTCTCAGAAGGAAAGAAATAGCAGCTGCATTTCTTGAAGTTCCTTGGGCCAAAATTTTCCTTTCAAAGTACTGTAAAGAGTTTATTCAAGCCGAGCCTATGTATAAATTTGGAGGATTTGGATTTGCATTTCCAAGAGGGTCTCCATATCTTCCAAGTGTAAACAAAGCACTGCTAAATCCTTCTGTGGATCCTTCTGTGGTTGCTCAGTCTGCTGGGATTGCTGGGCAAGTGTTTGCAGGTACTAATGAGCAGAGGCTCATCTCTTTTAGAAAGCACAAGCCGCCATCATTTCAGTGGTCAAGGGACCCGAAG 1230 0.4049 MTQDNSKGGQVLLDKILLNSFIGLSGKIQFTDQKLAPSHTFQIINVIGNGYKEIGFWSDGLGFSNSIGQNATYSCSMKELGQLLWPGRPWDTPRGWALPTSDKPLRVGVPALATLKQFINITQDHSENTTSFQGFTIDLFRATVELLPYHLPYKLYAFNDTYDNLVKQVYLKNFDAAIDVTIISYRYQYAEFTQPYTDPGVVMVVPIKSKAGHRAWLFVKPFTKTMWILIAAMIIYNGFVLWMLERHHWPELKGSMLNQTGTMAWLALTPLISFNGSFLQKYPQEVLHFQPAKIKQFSSLEEFAEALRRKEIAAAFLEVPWAKIFLSKYCKEFIQAEPMYKFGGFGFAFPRGSPYLPSVNKALLNPSVDPSVVAQSAGIAGQVFAGTNEQRLISFRKHKPPSFQWSRDPK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3420g00001 410 SMART GluR_14 104 367 IPR001320 GO:0015276|GO:0016020
Gabi3420g00001 410 Gene3D - 39 59 - -
Gabi3420g00001 410 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 275 365 IPR015683 -
Gabi3420g00001 410 FunFam Glutamate receptor 100 214 - -
Gabi3420g00001 410 Pfam Bacterial extracellular solute-binding proteins, family 3 129 365 IPR001638 -
Gabi3420g00001 410 Gene3D - 285 344 - -
Gabi3420g00001 410 CDD GluR_Plant 103 367 - -
Gabi3420g00001 410 Gene3D - 345 365 - -
Gabi3420g00001 410 Gene3D - 3 38 - -
Gabi3420g00001 410 SUPERFAMILY Periplasmic binding protein-like I 5 96 IPR028082 -
Gabi3420g00001 410 SUPERFAMILY Periplasmic binding protein-like II 82 365 - -
Gabi3420g00001 410 Gene3D - 99 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3420g00001 Gabi-Chr3420 16358 25403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3420g00001 6 365 Ion Channels AT2G29110 32.547 6.60e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3420g00001 - - vra:106760680 508.449