Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00038 ATGGTAGATAACAGCCAAGAGACTGAAGATACTTCCACAGATATTGACATTGATGATAAAAACCAAGTGGTTCAGCATGGGCCACTTTTGGTTGTGGACTCCAAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACTCTTCGTAGGCTGGTTCAGAATCGGGAGGCAGCAAGGAAGAGTCGCTTAAGGAAAAAGGCCTATGTTCAACAATTGGAGAACAGTCGACTTAGGCTTGCGCACTTAGAGCAAGAGCTTCAACGAGTACGTCAGCAGAGTGTATGCATTGCAACTGGAATTACGGGAGATCATGGTCATTCAGTTGTTGGAAATGGTGCGTTAGCATTTGACATGGACTATGCCCGTTGGGTGGATGAGCATCAACGTCTGATCAATGACCTAAGATCAGCTATAAATTCCCATAACAGTGACAATGAACTGCATCTTATTGTTGATAGTGTCATGGCACATTATGATCAATTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATGTGGTTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATAATTAGAAACCACCTTGAGCCGTTGTCAGATCAGCAGTTGATGAGCATTTACAACCTGCAGCAGTCTTGCCAGCAAGCTGAGGATGCTTTATCTCAAGGGATGGAAGCATTGCAACAATCTCTTTCAGAGACAATTTCCACCACCTCCTTAGGGCCCACTGGTTCTGGAAATGTTGCAGAGTACATGGGCCAAATGGCAATTGCAATGGCCAAGCTTGCCACACTAGAGACTTTCGTGCATCAGGCTGACCTATTGAGGCAACAAACACTGCAACAGTTGCAAAGAATTTTGACTACGCTCCAAGTTGCTCGTGCTCTCCTTGTCATAAATGATTACATTTCACGACTTCGAGCACTTAATTCATTATGGTTAGCGTGCCCTAAAGAGTACTGA 1008 0.4405 MVDNSQETEDTSTDIDIDDKNQVVQHGPLLVVDSKDQSKTKVKAEDQKTLRRLVQNREAARKSRLRKKAYVQQLENSRLRLAHLEQELQRVRQQSVCIATGITGDHGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSHNSDNELHLIVDSVMAHYDQLFRLKSIGAKADVFHILSGMWKTPAERCFMWFGGFRSSELLKIIRNHLEPLSDQQLMSIYNLQQSCQQAEDALSQGMEALQQSLSETISTTSLGPTGSGNVAEYMGQMAIAMAKLATLETFVHQADLLRQQTLQQLQRILTTLQVARALLVINDYISRLRALNSLWLACPKEY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00038 335 SMART brlzneu 44 97 IPR004827 GO:0003700|GO:0006355
Gabi3419g00038 335 Gene3D - 48 96 - -
Gabi3419g00038 335 ProSiteProfiles DOG1 domain profile. 115 331 IPR025422 GO:0006351|GO:0043565
Gabi3419g00038 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Gabi3419g00038 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Gabi3419g00038 335 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Gabi3419g00038 335 Pfam Seed dormancy control 133 207 IPR025422 GO:0006351|GO:0043565
Gabi3419g00038 335 Pfam bZIP transcription factor 47 77 IPR004827 GO:0003700|GO:0006355
Gabi3419g00038 335 Coils Coil 126 146 - -
Gabi3419g00038 335 FunFam BZIP family transcription factor 47 96 - -
Gabi3419g00038 335 PANTHER TRANSCRIPTION FACTOR TGA9 20 334 - -
Gabi3419g00038 335 Coils Coil 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00038 Gabi-Chr3419 426713 429641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00038 27 334 bZIP Transcription Factor Family AT1G68640 69.481 9.95e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3419g00038 DOG1 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00038 K14431 - gmx:100775783 522.316