Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00037 ATGGTAGATAACAGCCAAGAGACTGAAGATACTTCCACAGATATTGACATTGATGATAAAAACCAATGTTTCTCAACTGTGTCTTGGTCCAATGGAGTTCAGCATGGGCCACTTTTGGTTGTGGACTCCAAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACTCTTCGTAGGCTGGTTCAGAATCGGGAGGCAGCAAGGAAGAGTCGCTTAAGGAAAAAGGCCTATGTTCAACAATTGGAGAACAGTCGACTTAGGCTTGCGCACTTAGAGCAAGAGCTTCAACGAGTACGTCAGCAGAGTGTATGCATTGCAACTGGAATTACGGGAGATCATGGTCATTCAGTTGTTGGAAATGGTGCGTTAGCATTTGACATGGACTATGCCCGTTGGGTGGATGAGCATCAACGTCTGATCAATGACCTAAGATCAGCTATAAATTCCCATAACAGTGACAATGAACTGCATCTTATTGTTGATAGTGTCATGGCACATTATGATCAATTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATGTGGTTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATAATTAGAAACCACCTTGAGCCGTTGTCAGATCAGCAGTTGATGAGCATTTACAACCTGCAGCAGTCTTGCCAGCAAGCTGAGGATGCTTTATCTCAAGGGATGGAAGCATTGCAACAATCTCTTTCAGAGACAATTTCCACCACCTCCTTAGGGCCCACTGGTTCTGGAAATGTTGCAGAGTACATGGGCCAAATGGCAATTGCAATGGCCAAGCTTGCCACACTAGAGACTTTCGTGCATCAGGCTGACCTATTGAGGCAACAAACACTGCAACAGTTGCAAAGAATTTTGACTACGCTCCAAGTTGCTCGTGCTCTCCTTGTCATAAATGATTACATTTCACGACTTCGAGCACTTAATTCATTATGGTTAGCGTGCCCTAAAGAGTACTGA 1035 0.4396 MVDNSQETEDTSTDIDIDDKNQCFSTVSWSNGVQHGPLLVVDSKDQSKTKVKAEDQKTLRRLVQNREAARKSRLRKKAYVQQLENSRLRLAHLEQELQRVRQQSVCIATGITGDHGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSHNSDNELHLIVDSVMAHYDQLFRLKSIGAKADVFHILSGMWKTPAERCFMWFGGFRSSELLKIIRNHLEPLSDQQLMSIYNLQQSCQQAEDALSQGMEALQQSLSETISTTSLGPTGSGNVAEYMGQMAIAMAKLATLETFVHQADLLRQQTLQQLQRILTTLQVARALLVINDYISRLRALNSLWLACPKEY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00037 344 Pfam Seed dormancy control 142 216 IPR025422 GO:0006351|GO:0043565
Gabi3419g00037 344 SUPERFAMILY Leucine zipper domain 57 100 IPR046347 GO:0003700|GO:0006355
Gabi3419g00037 344 Coils Coil 135 155 - -
Gabi3419g00037 344 Coils Coil 76 103 - -
Gabi3419g00037 344 PANTHER TRANSCRIPTION FACTOR TGA9 20 343 - -
Gabi3419g00037 344 SMART brlzneu 53 106 IPR004827 GO:0003700|GO:0006355
Gabi3419g00037 344 FunFam BZIP family transcription factor 56 105 - -
Gabi3419g00037 344 Pfam bZIP transcription factor 56 86 IPR004827 GO:0003700|GO:0006355
Gabi3419g00037 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Gabi3419g00037 344 Gene3D - 57 105 - -
Gabi3419g00037 344 ProSiteProfiles DOG1 domain profile. 124 340 IPR025422 GO:0006351|GO:0043565
Gabi3419g00037 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 99 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00037 Gabi-Chr3419 426713 429641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00037 31 343 bZIP Transcription Factor Family AT1G68640 69.010 7.21e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3419g00037 DOG1 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00037 K14431 - gmx:100775783 551.206