Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00031 ATGGCTACCGATGCCCATGACTCTCGTCGCAAGCATCACCGATCATCCTCTCCGGAGGACGTCGAGAGATCCTCGAAGCGCCACAAGCATCGCCACCATAGCCACCGCCACCGCCACGGGAGCAAAAAACGCGAAGAAGAGATTGAATACGATGGCGGAACATTTGCTGCGGTTCCTTCTCCAACTCCCACTCCTAATCCTGGTCCGCACAGCCGTCTCCCTGACGACGATGTGGAAGAGGGAGAGATTCTCGACGACGTGGCCCTCGACGGTGAGGTTGGAAAAAGGATGACGGAATCTGATGTCGAACCTGGTGAAATCGAGGTGACAGGAGATCGATATGTTCGATCTGATAAGAAAAATCCGGGACTTCTCACTAAAAATTCAAAAACTAGAAGCGAGGACATTAGCAATGATAAATTTATTAGTCCTGCATTGGATGCAGAAGAAGGGACATGGCGTCAGAGCCACCTTGGTCATGAAGTTCATGAAGATGATGGTTCTCCTAATCATTTAAGTGCTGAGACTCAAGATGGAATGGATGCTAGAGCTAGTACAGATGGTGTGGACAATGGGTATTTGGCTCGAAAATCTTCCAAAGGGGATAAGAGGCAGAATGGGGAACTTGGACATTTTAAAGGAAATGAGAAACTAAAAGGTGACTATCACTATGAAGCACCGGAAGCTAATGGAATGAAAGTAAATTGCCATAGGAATTCATCTTCTGAAAGTGGGGGAGAAAAATATAGAATGTCTGGAAGTTCACCTTCTCATGATAGACATAGAAGTCGGTCAAGATCAACTGGTCATACTAGGGACAGGTCTCGTTCCCGTGGTATAGTAGAAGAATATGTTCATTCCAAGAGAAGGCAAGCTGGGGAAAAAGGATCCCATTATTACACTGGAAGACATAAGACTGACTATGATCTTGATGAGGAAAGAGGGAGGGCTCGTGGAAGGGAGCGTGACCATGGCAGTATAGATTTGGTGGTAGATGATAGAAGGGAACACAGTACCAGGTATCACAGTCGGGAGGCCCGGGATAGGGATAGGAGTAGGGACGGGGATGTGGATAGAGACTTACACAGGGAAAAGAAACGAGAGGAAACAAGCAGGAATAGGGAGGTTGATTGGGTGGGTATAAGGGAAAAAGAACATAGAAGGAGCCATGAGAGATATAGGAGGGATGGAGAAAAAGATAGGAGCAGGGAAAGGGAGGAGGATAGGGATAGGGATAGGAGACGAGAAAAGGAAAGAGATAGGAGCTGGGAGACTGCGTTTGAGAGGGAACATAGAAGGGAAAAGGAAAGAGGTAGGAGTAGGGACAGAACACGGGGCAGCGAGAGAGATAGAGACTGGGAGAGTGAAAGGGATGACAAGAATCGGGAAAGGGATAACATTAAGGAGAGGGAAAGGCGAGATGATAGATATAGGCACAAGGATAGAGACACTGCGAATGATAAGGATAAGCATCTGCATCATGATGATGGTTATGACAATGGAGATAGATATAGAAAACATTCAAGACATGATGAAACTGAATACCATCGGCAGAGAAAAAGAAATTCTGATCCTGTTAAGTTTTATAACTCTATGGGAAGTACCATACAAGAGGATGAAAGAAAACTAAAAAGTGGTGAGGTTGAACAAGATGACATTGATGAGGATACAATGCAATTACCTGAACAAGAAGAGGAAGATCTCAACAGGATCAAAGAGGAGAGTAGAAGGAGAAGGGAAGCAATTATGGAGAAATACAAGAAGCAACATCAGCAAGTAGAACAAGTGGTTGAAAATGAAGCAAAAAACAAGGATGCAGACATTCCTGCTGACATTTCTGAAGCACTTGATGATAAGAATGAGGATGTTGATGATGCGGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGTTACTTCTGGGGAGATATCTGGTGCAGGGGGCCTGGGAGAGGGTACTCCAAAGAGTGAGAGGTCAGATGACAAGTTTTGCGATGATATATTTGGTGAGACACCAACTGGAGTTCGCAAATCGGGAAAAGGAGATGGTTTACTGATTGAGAGGGTTAGCCTGCATGACAATTGGGATGATGCAGAGGGCTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACTTCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGCTGGTAATGGTGAGCCAGAAGTAGTAGCTATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAGTTGGTCATACTAAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGGCTTAGGCTAACCGCTGTGAGAGCATATGCAAAACAGCTTTTTATTGCATTGAAGCATCTCCGAAACTGTGGCGTTCTTCATTGTGATATTAAGCCAGATAATATGTTGGTGAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAGAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCTCCTGAAATAAGCTGTTGTTTGTATGAGTTCTATACTGGGAAGGTTCTTTTTCCAGGACTTACCAACAATGATATGCTACGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAGAAGATGCTACGTAAGGGAGCATTTACTGAGCAACATTTTGATCAGGACCTGATTTTTCTTGCTACAGAGGAGGATCCTGTAACAAAAAAGACCATCAAGAGGATGATCCTCAACATAAGGCCAAAAGATATTGGGACAATCATCACTGGCTCTCCTGGGGAGGACCTGAAAATGTTAGCCAACTTTAAGGATCTTCTGGAGAAAATTTTTGTCTTGGATCCAGACAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 3063 0.4365 MATDAHDSRRKHHRSSSPEDVERSSKRHKHRHHSHRHRHGSKKREEEIEYDGGTFAAVPSPTPTPNPGPHSRLPDDDVEEGEILDDVALDGEVGKRMTESDVEPGEIEVTGDRYVRSDKKNPGLLTKNSKTRSEDISNDKFISPALDAEEGTWRQSHLGHEVHEDDGSPNHLSAETQDGMDARASTDGVDNGYLARKSSKGDKRQNGELGHFKGNEKLKGDYHYEAPEANGMKVNCHRNSSSESGGEKYRMSGSSPSHDRHRSRSRSTGHTRDRSRSRGIVEEYVHSKRRQAGEKGSHYYTGRHKTDYDLDEERGRARGRERDHGSIDLVVDDRREHSTRYHSREARDRDRSRDGDVDRDLHREKKREETSRNREVDWVGIREKEHRRSHERYRRDGEKDRSREREEDRDRDRRREKERDRSWETAFEREHRREKERGRSRDRTRGSERDRDWESERDDKNRERDNIKERERRDDRYRHKDRDTANDKDKHLHHDDGYDNGDRYRKHSRHDETEYHRQRKRNSDPVKFYNSMGSTIQEDERKLKSGEVEQDDIDEDTMQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEQVVENEAKNKDADIPADISEALDDKNEDVDDAEPSFAVGKSPENVNVTSGEISGAGGLGEGTPKSERSDDKFCDDIFGETPTGVRKSGKGDGLLIERVSLHDNWDDAEGYYSYRFGEILDGRYEVTSAHGRGVFSTVVRAKNLKAGNGEPEVVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEISCCLYEFYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLIFLATEEDPVTKKTIKRMILNIRPKDIGTIITGSPGEDLKMLANFKDLLEKIFVLDPDKRLTVSQALNHPFITGK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 153 171 - -
Gabi3419g00031 1020 FunFam Serine/threonine-protein kinase PRP4 homolog 777 1018 - -
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 234 251 - -
Gabi3419g00031 1020 PANTHER DUAL SPECIFICITY PROTEIN KINASE 440 1018 - -
Gabi3419g00031 1020 ProSiteProfiles Protein kinase domain profile. 717 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 619 663 - -
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 270 524 - -
Gabi3419g00031 1020 SMART serkin_6 717 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00031 1020 CDD STKc_PRP4 716 1017 IPR044092 GO:0004674|GO:0006468|GO:0045292
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 196 226 - -
Gabi3419g00031 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 1 573 - -
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 88 125 - -
Gabi3419g00031 1020 Pfam Protein kinase domain 718 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 26 40 - -
Gabi3419g00031 1020 FunFam serine/threonine-protein kinase PRP4 homolog 688 776 - -
Gabi3419g00031 1020 Gene3D Phosphorylase Kinase; domain 1 687 776 - -
Gabi3419g00031 1020 Gene3D Transferase(Phosphotransferase) domain 1 777 1018 - -
Gabi3419g00031 1020 MobiDBLite consensus disorder prediction 1 25 - -
Gabi3419g00031 1020 SUPERFAMILY Protein kinase-like (PK-like) 704 1019 IPR011009 -
Gabi3419g00031 1020 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00031 Gabi-Chr3419 362226 375500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00031 716 1014 Core Cell Cycle Gene Families AT1G66750 28.000 3.11e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gabi3419g00031 Pkinase 9.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00031 K08827 - gmx:100776908 1393.64