Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00025 ATGAGCGGGAAGAAGAGGGTGCAGTTGGCGACGGGGAAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGAAGAACGAGAACCGAACGATGTCGTCTTCGAAATCTCTTTCTTCTGCTTCTTCTTCGTCGTCGTCATCTTCTTCGGACGAGAGAGAGTACACGGTGCAGGACCTACGGGACCGGATGAAATCGTCGAGAGGAAGCCGATTCGATCTGATAGAGAGCGAGTTTGGACTCAACTCGACTCGGAGGAAGTTCAGTCGCCAAGCTCTTCTCCATGGAATCCGAGACTTCTCCAAAGACTTAATTATTCATCCTGATAACAGGTGGTATCGGTTATGGACAAAATTCATATTGTTATGGGCAGTGTACTCATCCTTCTTCACTCCAATGGAGTTTGCATTTTTTCGTGGCCTGCCTGAGAATCTCTTTATATTGGACATCATTGGACAAATAGCTTTTCTCGTAGACATTGTTTTTCAGTTCTTTCTTGCTTATAGAGACAGTCGGACCTACCGTATGGTCTACAAGCGAACCCCTATTGCTCTCCGGTATCTGAAATCTAGCTTTATCTTTGATTTTCTTGGATGTATGCCCTGGGACATCATCTTCAAGGCCTGTGGACACAGAGAGGAAGTAAGGTACCTTTTGTGGATCAGATTATATCGAGTGCGGAAAGTCACGGACTTTTTCCAGAAGTTGGAGAAGGATATACGTATCAATTACATTGTTACTCGGGTTGTGAAACTTATAGTAGTTGAACTCTACTGCACCCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACCCTACCTGAATCCCAAGAGGGGTACACATGGATAGGAAGTTTAAAACTGGGTGACTCTAGTTATTCACATTTCAGAGAAATCGATATTTGGAAGCGCTATACAACATCTTTGTATTTTGCCGTTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCTGTAAACATGAGGGAGATGATATTCGTAATGATATATGTTTCGTTTGACATGGTTCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGTAAAGTTTAGGGACAAGATGACAGATCTTATGAAATATATGAACAGAAATAGACTTGGAAGGGATATCCGGGAACAAATAAAAGGCCATGTGCGCTTACAGTTTGAGAGTAGCTACGTTGATGCTGCTGTTCTTCAGGACATCCCCATTTCTATTCGATCTAAGATATCCCAAACATTGTATTTGCCATACATTGAAAAGGTTCCTCTTTTTAGAGGCTGCACTTCAGAATTCATCAATCAGATTGTTATTAAACTGCATGAGGAATTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCACGGTGTGCTGGAGGAAATTGGCACAGCTGAAGATGGGTCTGAAGAAACTGTTTCACTTCTTCAACCTAACAGTTCGTTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTTCGTGTTTGTGAACTTTGTAGGCTCTTGCGGCTTGATAAACAATCATTTACAAGTATCCTAGATATATACTTTAATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCTCTTAGAGGAAAGCAGTTGGAGTCAGACATCTCATTTCATATCGGAAAGCAGGAAGCTGAAGTTGCTTTGAAGGTCAACAGTGCAGCTTTTAATGGGGATCTCTATCAGCTGAAAGGTTTGATTCGAGCTGGAGCTGATCCCAACAAGACAGACTATGATGGAAGGTCTCCTTTGCATCTTGCTGCATATAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACATCAATATCAAAGATAACTTTGGGAACACACCCTTACTTGAAGCCGTTAAGAATGGCCACGATCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAAGATAGAAAATGCTGGTAGTTTTTTATGTGCAGCAGTTGCAAGGGGAGATTCAGATTATATTAAAAGGCTTTTATCTAATGGCATGGATCCTAACTCTAAGGACTATGATTACCGAAGCCCTCTTCATGTTGCTGCAGCTGAAGGTTTATACATCATGGCAAAGTTGCTATTAGAAGCCGGAGCTAGTGTTTTTGCCAAGGACAGATGGGGAAATACCCCGCTCAATGGAGCCCGAATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTGCTCAATTGTCAGAATTTCCATGTCCTTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTGTTTCCTTTCCACCCGTGGGATCCAAAAGAACACAGAAGACATGGAATTGTATTATGGGTTCCCCACACCATTGAAGAGCTAATCAAAACAGCTGCAGAGCAGATGGAATTTTCTAGCGATTCTTTTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACTTGATCAAGGACGGTCAGAAGCTATATTTAGTCCCGCAAACACGTTAG 2574 0.4165 MSGKKRVQLATGKEEEEEEEEEEKNENRTMSSSKSLSSASSSSSSSSSDEREYTVQDLRDRMKSSRGSRFDLIESEFGLNSTRRKFSRQALLHGIRDFSKDLIIHPDNRWYRLWTKFILLWAVYSSFFTPMEFAFFRGLPENLFILDIIGQIAFLVDIVFQFFLAYRDSRTYRMVYKRTPIALRYLKSSFIFDFLGCMPWDIIFKACGHREEVRYLLWIRLYRVRKVTDFFQKLEKDIRINYIVTRVVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDSSYSHFREIDIWKRYTTSLYFAVVTMATVGYGDIHAVNMREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQFESSYVDAAVLQDIPISIRSKISQTLYLPYIEKVPLFRGCTSEFINQIVIKLHEEFFLPGEVVMEQGNVVDQLYFVCHGVLEEIGTAEDGSEETVSLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTSILDIYFNDGRKVLNNLLEGKESLRGKQLESDISFHIGKQEAEVALKVNSAAFNGDLYQLKGLIRAGADPNKTDYDGRSPLHLAAYRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKNGHDRVASLLVREGASMKIENAGSFLCAAVARGDSDYIKRLLSNGMDPNSKDYDYRSPLHVAAAEGLYIMAKLLLEAGASVFAKDRWGNTPLNGARMCGNKNLIKLLEDAKSAQLSEFPCPSQEFTDKMHPKKCTVFPFHPWDPKEHRRHGIVLWVPHTIEELIKTAAEQMEFSSDSFILSEDAGKITDVDLIKDGQKLYLVPQTR 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00025 857 ProSiteProfiles cAMP/cGMP binding motif profile. 432 552 IPR000595 -
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat profile. 641 673 IPR002110 GO:0005515
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat region circular profile. 641 672 - -
Gabi3419g00025 857 Gene3D - 113 358 - -
Gabi3419g00025 857 Gene3D - 674 768 IPR036770 -
Gabi3419g00025 857 ProSiteProfiles KHA domain profile. 784 857 IPR021789 -
Gabi3419g00025 857 SMART cnmp_10 432 550 IPR000595 -
Gabi3419g00025 857 Coils Coil 6 33 - -
Gabi3419g00025 857 Gene3D Helix hairpin bin 359 415 - -
Gabi3419g00025 857 Pfam Ankyrin repeats (3 copies) 583 671 IPR002110 GO:0005515
Gabi3419g00025 857 Pfam Ankyrin repeats (3 copies) 678 759 IPR002110 GO:0005515
Gabi3419g00025 857 Pfam Ion transport protein 112 357 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi3419g00025 857 SMART ANK_2a 641 670 IPR002110 GO:0005515
Gabi3419g00025 857 SMART ANK_2a 608 637 IPR002110 GO:0005515
Gabi3419g00025 857 SMART ANK_2a 738 768 IPR002110 GO:0005515
Gabi3419g00025 857 SMART ANK_2a 672 701 IPR002110 GO:0005515
Gabi3419g00025 857 SMART ANK_2a 705 734 IPR002110 GO:0005515
Gabi3419g00025 857 PRINTS Ankyrin repeat signature 721 735 IPR002110 GO:0005515
Gabi3419g00025 857 PRINTS Ankyrin repeat signature 609 624 IPR002110 GO:0005515
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Gabi3419g00025 857 FunFam Potassium channel SKOR 112 357 - -
Gabi3419g00025 857 FunFam Gated outwardly-rectifying K+ channel 647 773 - -
Gabi3419g00025 857 CDD CAP_ED 432 546 IPR000595 -
Gabi3419g00025 857 Pfam Cyclic nucleotide-binding domain 452 536 IPR000595 -
Gabi3419g00025 857 Gene3D Jelly Rolls 416 555 IPR014710 -
Gabi3419g00025 857 MobiDBLite consensus disorder prediction 1 61 - -
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat region circular profile. 705 737 - -
Gabi3419g00025 857 MobiDBLite consensus disorder prediction 30 51 - -
Gabi3419g00025 857 PRINTS EAG/ELK/ERG potassium channel family signature 147 157 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3419g00025 857 PRINTS EAG/ELK/ERG potassium channel family signature 348 357 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3419g00025 857 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3419g00025 857 PRINTS EAG/ELK/ERG potassium channel family signature 304 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat region circular profile. 608 640 - -
Gabi3419g00025 857 FunFam Potassium channel KAT2 420 557 - -
Gabi3419g00025 857 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Gabi3419g00025 857 SUPERFAMILY Voltage-gated potassium channels 105 357 - -
Gabi3419g00025 857 SUPERFAMILY Ankyrin repeat 581 760 IPR036770 -
Gabi3419g00025 857 Pfam KHA, dimerisation domain of potassium ion channel 783 852 IPR021789 -
Gabi3419g00025 857 Gene3D - 565 673 IPR036770 -
Gabi3419g00025 857 SUPERFAMILY cAMP-binding domain-like 360 549 IPR018490 -
Gabi3419g00025 857 PANTHER POTASSIUM CHANNEL AKT1 77 853 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00025 Gabi-Chr3419 315695 328072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00025 679 758 Ion Channels AT5G37500 33.333 4.84e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00025 K21867 - gmx:100814385 1497.64