Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00014 ATGAATTCGTTGCCGGCGATTGAGATTGAGGAGAGACACATGGCCATGGAAGCACACTGTGCCGTTTGCAAGGAACCTTTTGAACTTGGAACCGGAGCAAGGGAAATGCCTTGCAAGCACATATACCACCCTGAATGCATCTTACCATGGCTTGCAATTCGGAATTCTTGCCCCGTTTGTCGCCATGAATTACCTTTTTATCAACAGCCGAATAGACGTGGTATTTCAGCAGCAGTAGCAGCAACACTAGCAGCAGCAGCAGCAGCAGCACGGCAAGAGAATGTGGGGTTGAGAAATTGGAGGATACCAGGTGGTGTTTCAGCAGCAGCATCATCATCAGCAGCAGCAGCAGCAGTTCCGGTGGGATGGTTTTCCGGAGGAAGAAGAGGAAGAAGGCGTACTCTGGTGTATTACATAGATTCGGATGGTACATTTGTTGAACAAATTGGAGGTTTCGATGTGATGATATCGCGGAGGAGGAGAAGTCGTGGTGGGTTGCGCAGAATGTTTAGCAGTTTGTTTAGTTGCTTCCAACCACCTCTTCACGCTAATTTATAA 558 0.4803 MNSLPAIEIEERHMAMEAHCAVCKEPFELGTGAREMPCKHIYHPECILPWLAIRNSCPVCRHELPFYQQPNRRGISAAVAATLAAAAAAARQENVGLRNWRIPGGVSAAASSSAAAAAVPVGWFSGGRRGRRRTLVYYIDSDGTFVEQIGGFDVMISRRRRSRGGLRRMFSSLFSCFQPPLHANL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00014 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 65 - -
Gabi3419g00014 185 Pfam Ring finger domain 19 61 IPR001841 -
Gabi3419g00014 185 FunFam E3 ubiquitin-protein ligase RING1-like 1 67 - -
Gabi3419g00014 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 77 IPR013083 -
Gabi3419g00014 185 SUPERFAMILY RING/U-box 2 67 - -
Gabi3419g00014 185 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Gabi3419g00014 185 SMART ring_2 20 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00014 Gabi-Chr3419 235367 235924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00014 1 100 C3H Transcription Factor Family AT3G60080 37.037 8.10e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00014 K11982 - gmx:100807324 154.066