Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00013 ATGGAAATGGGGTTTAGTGTGGCTGTGAAGAGGTTGAAGGATGTTGTCTCAACAGAAAAAGAATTCCGAGAAAAAATTGAAGAAGTGGGGAAGATGATTCATGAGAACTTGGTCCCACTCAGAGGTTATTCTTTTCGCAGGGATGAAAAGCTCATTGTTTATGATTATATGCCCATGGGAAGCTTATCTGCACTCTTACATTCAAATAATGGAGCTGGGAGGACTCTACTGAGTTGGGAAACAAGGTCTTCCATTGCCCTTGGTGCTGCTCGTGGGATTGCGTACCTACATTCACATGGCCAAACAACCTCTCATGGAAATATCAAGTCGTCAAACATCCTTCTCATGGAATAA 354 0.4266 MEMGFSVAVKRLKDVVSTEKEFREKIEEVGKMIHENLVPLRGYSFRRDEKLIVYDYMPMGSLSALLHSNNGAGRTLLSWETRSSIALGAARGIAYLHSHGQTTSHGNIKSSNILLME 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00013 117 Pfam Protein tyrosine and serine/threonine kinase 5 116 IPR001245 GO:0004672|GO:0006468
Gabi3419g00013 117 Gene3D Transferase(Phosphotransferase) domain 1 57 117 - -
Gabi3419g00013 117 SUPERFAMILY Protein kinase-like (PK-like) 4 115 IPR011009 -
Gabi3419g00013 117 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Gabi3419g00013 117 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00013 117 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 116 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00013 Gabi-Chr3419 193980 196152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00013 7 117 Receptor kinase-like Gene Family AT1G48480 73.874 3.75e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3419g00013 PK_Tyr_Ser-Thr 1.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00013 - - gmx:100801103 196.823