Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00009 ATGAGAATATTTTATACAAAAAAAATGAAGTCTTTGCTCCTCTGCTTCACTCTCTGCATCTTCGCCATTGCCGGGGCGGATCTAGCTTCCGACAGAGCCGGCCTGGTGGCCCTCCGTGCCGGCGTTGGTGGCCGCACTCTCATGTGGAACCTCTCTCAGGCGAGCCCGTGCTTGTGGACCGGTGTGACCTGCAACAACGAGAGGGTCACGATGTTGCATCTTCCCGGAGTGGGTCTCTCCGGGAACCTTCCGATGGGTTTGGGGAACCTGACCCAACTTCAGACCCTTTCTCTCCGGTTCAACGCTCTAACCGGACCCATTCCACCCGATTTCTCCAACCTCTCTGTCCTGCGGAACCTCTATCTGCAGGGTAACTTTTTCTCCGGCGAAATTCCCGATTTGGTGTTCGGTTGGCAGAACTTGGTAAGGTTGAATTTGGGTGGCAACAATTTCAGCGGAGAGATCTCTCCCAAATTCAATGGGCTCACTCGTTTGGATACACTGTATTTGGAGCACAACGGGTTCACTGGGTCCATCCCTGACCTCAGTGTTCCTCCCCTTGTGCAATTCAATGTCTCGGACAATAAGCTAAGTGGGTCCATTCCTGAGAGGTTTTCGAGTTTGGACCAAAGTGCTTTTATTGGGAATTCCCTCTGCGGGAAGCCCTTGCTAGCTTGCCCTGGAACAACGGGGAAGAACAACAAGTTGTCTCGTGGAGCCATTGCGGGTATCGTCATTGGTTCTTTGATTGGTGTGTTGTTGATTCTGCTCCTTTTATTCTTTTTGTGTAGAAAAAGGAGCGGGAAAAGTGATTCGTTGGATGTTGCACCTGCTAAGCATGATGCTCTTCAGAAGACTGATAGGGATAGTGAGAGTATTAGTGCGAGTAATTTGGCTTTAGCATCAGCAGGGGAAAGGAGTGATGTTAAGAGTGGTGGTGGTGGAGATAAGGGTTTAGTGTTTTTTGAGAATGTGAATAAACAGTATAATTTGGAGGAGTTGTTTAGGGCTTCTGCTGAAGTGCTGGGTAAGGGGACATTTGGAACCACTTATAAGGCTAACATGGAAACGGGGTTTAGTGTGGCTGTGAAGAGGTTGAAAGATGTTGTCTCAACGGAAAAGGAATTCCGAGAGAAAATTGAGGAAGTGGGGAAGATGGTTCATGAGAACTTGGTCCCACTCAGAGGTTATTATTTTAGCAGGGATGAAAAGCTCATTGTTTATGATTACATGCCCATGGGAAGCTTATCTGCACTCTTACATGCAAATAATGGAGCTGGCAGGACTCCACTGAGTTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCTGCACGTGGGATTGCATACCTACATTCACATGGCCAAACAACCTCTCATGGAAATATCAAGTCATCAAACATCCTTCTCACCAAATCTTATGAACCTCGTGTCTCTGACTTTGGCCTTGCTCATCTTGCTCTCCCAACCTCTACACCAAACCGTGTTTCAGGTTACCGTGCCCCAGAGGTCACTGATGCCCGCAAAGTTTCCCAAAAAGCAGATGTCTATAGCTTTGGTATAATGCTTTTGGAGCTCCTAACAGGGAAGGCTCCTACTCATTCTTCACTGAATGAAGAAGGGGTAGACCTACCAAGATGGGTCCAATCTGTGGTTCAAGACGAGTGGAATACTGAAGTTTTTGACATGGAGCTTCTAAGGTACCAGAATGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCTCTTGATTGTACTGCTCAATATCCTGACAAGAGACCTTCAATGGATGTGGTGGCAAGCAGGATTCAGGAAATTTGTCATCCTATTTTAGAGGAAGAGGAGGAGAAGAATCATGGTTCGTTTAAAGAAGCAGATAATGGAGTTTCCCAACAGTACTATTCTGTTGATTCGGGTGCATCACAAGCTTGA 1929 0.4728 MRIFYTKKMKSLLLCFTLCIFAIAGADLASDRAGLVALRAGVGGRTLMWNLSQASPCLWTGVTCNNERVTMLHLPGVGLSGNLPMGLGNLTQLQTLSLRFNALTGPIPPDFSNLSVLRNLYLQGNFFSGEIPDLVFGWQNLVRLNLGGNNFSGEISPKFNGLTRLDTLYLEHNGFTGSIPDLSVPPLVQFNVSDNKLSGSIPERFSSLDQSAFIGNSLCGKPLLACPGTTGKNNKLSRGAIAGIVIGSLIGVLLILLLLFFLCRKRSGKSDSLDVAPAKHDALQKTDRDSESISASNLALASAGERSDVKSGGGGDKGLVFFENVNKQYNLEELFRASAEVLGKGTFGTTYKANMETGFSVAVKRLKDVVSTEKEFREKIEEVGKMVHENLVPLRGYYFSRDEKLIVYDYMPMGSLSALLHANNGAGRTPLSWETRSAIALGAARGIAYLHSHGQTTSHGNIKSSNILLTKSYEPRVSDFGLAHLALPTSTPNRVSGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSVVQDEWNTEVFDMELLRYQNVEEEMVKLLQLALDCTAQYPDKRPSMDVVASRIQEICHPILEEEEEKNHGSFKEADNGVSQQYYSVDSGASQA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00009 642 Gene3D Ribonuclease Inhibitor 39 136 IPR032675 -
Gabi3419g00009 642 MobiDBLite consensus disorder prediction 613 642 - -
Gabi3419g00009 642 Gene3D Ribonuclease Inhibitor 140 226 IPR032675 -
Gabi3419g00009 642 FunFam Probable inactive receptor kinase RLK902 28 170 - -
Gabi3419g00009 642 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Gabi3419g00009 642 Gene3D Transferase(Phosphotransferase) domain 1 411 629 - -
Gabi3419g00009 642 PANTHER OS05G0588300 PROTEIN 14 611 - -
Gabi3419g00009 642 CDD STKc_IRAK 342 605 - -
Gabi3419g00009 642 SUPERFAMILY Protein kinase-like (PK-like) 340 600 IPR011009 -
Gabi3419g00009 642 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Gabi3419g00009 642 SUPERFAMILY L domain-like 49 210 - -
Gabi3419g00009 642 MobiDBLite consensus disorder prediction 623 642 - -
Gabi3419g00009 642 Pfam Protein kinase domain 339 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00009 642 ProSiteProfiles Protein kinase domain profile. 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3419g00009 642 Gene3D Phosphorylase Kinase; domain 1 315 410 - -
Gabi3419g00009 642 FunFam Probable inactive receptor kinase At1g48480 411 613 - -
Gabi3419g00009 642 FunFam pollen receptor-like kinase 1 305 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00009 Gabi-Chr3419 145035 150232 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00009 27 605 Receptor kinase-like Gene Family AT1G48480 57.259 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3419g00009 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00009 - - gmx:100801103 899.427