Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3419g00005 ATGGGAAGGCAACCATGCTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAAGATAAGAAGCTCATTAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTATCAGGGCTGTTAAGGTGTGGGAAGAGCTGCAGGCTCAGGTGGACAAACTACCTGAGGCCAGACTTAAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAGAACCATTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTCACGCACAAGGCACTCTCTAATGCAACTGAGCAAACCCAAAATCAACCTCAACAACAACTACACCAACCACTAGAAGAACAGCAGAACCAACAACCTTTGCCAGTTGATTTTGACCACAAATTTGAACATGAAAAAAGTCAAAATAAGAAGCCAGAGACTTCATTTGAGTCATCAACCATCACTGAAGCCAAAGAGGATGACAAAATTATAGCACCCGAATTTGAAACAATGGAGCTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATAGAAGCCGATGAGATTCTAATGCCCTGTGTTCCATCCTCTTCTTCAACCTCTACATCTTCTTCAAATTCAACCAATTTCCTTGAAGACCTGCACCTCCCAGATTTTGAGTGGTCTTGTAATTACAATGATAATAGTATTAACAATAACAACGAAGACAACATGGCCTTGTGGGATGATGAATTTATTAGCTGTTTAAATTTGCTGATTAATGATGATGATGATGATGATGATAAAAAACAAGTATTTGATGCTCCTCTCACTCAGTACCCAAGAATGGTCGTGGATTCAGAATCTTGGGCATGTGGGTTATTTTGA 960 0.4094 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKALSNATEQTQNQPQQQLHQPLEEQQNQQPLPVDFDHKFEHEKSQNKKPETSFESSTITEAKEDDKIIAPEFETMELMNGFCTDEVPIIEADEILMPCVPSSSSTSTSSSNSTNFLEDLHLPDFEWSCNYNDNSINNNNEDNMALWDDEFISCLNLLINDDDDDDDKKQVFDAPLTQYPRMVVDSESWACGLF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3419g00005 319 FunFam Myb transcription factor 71 133 - -
Gabi3419g00005 319 FunFam MYB transcription factor 11 67 - -
Gabi3419g00005 319 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gabi3419g00005 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3419g00005 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3419g00005 319 CDD SANT 16 61 IPR001005 -
Gabi3419g00005 319 MobiDBLite consensus disorder prediction 166 188 - -
Gabi3419g00005 319 MobiDBLite consensus disorder prediction 132 151 - -
Gabi3419g00005 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3419g00005 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Gabi3419g00005 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3419g00005 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3419g00005 319 SMART sant 66 114 IPR001005 -
Gabi3419g00005 319 SMART sant 13 63 IPR001005 -
Gabi3419g00005 319 CDD SANT 74 112 IPR001005 -
Gabi3419g00005 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3419g00005 319 Gene3D - 70 155 - -
Gabi3419g00005 319 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3419g00005 Gabi-Chr3419 81951 84267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3419g00005 1 287 MYB Transcription Factor Family AT1G66230 57.860 8.65e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3419g00005 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3419g00005 K09422 - gmx:100803624 473.396