Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00032 ATGGACTCCGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTTGACGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATTGATTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGAAGATGCCGATAGGGTTGAGTCTCGTCGCCCGGAGCAAAATTTCACCATCTTGAAGGAATCCGATATCCGATTAAGACAAGAAGAAGACATCACAAGAGTAGCAACGGTTCTTTCCATTTCAAGAGTTTCTGCCAGCATACTACTTCGTCACTACAATTGGAGCGTCAGTAAAGTCCATGATGCATGGTTTGCTGATGAAGATGGAGTCCGAAAAGCAGTTGGCTTGTTGGAGACGCCAGTTGTCCAGCATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCTTGTGGTCATCCCTACTGTGTCTCATGCTGGGAAGGATATATTGGCACGTCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAGGATATGATTAATCTATTAGCATCCAAAGAAGATAAACATAAGTATGCCCGGTATCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCCGCTCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTCAGTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTAGACTGTGGCACTGTGGGAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCACCGTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCCTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGCAGCTTAGTGACACGCAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCGTATGGGTTCTATTTACCTGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAGCCATTCCTCAGTGCTGATGGCCCATCCAAAGAATTCAACGACTTTCGGACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTTAGGGCATTAGAGAATGGTCTATCTGATGTGGATAGTAATGGAGCTGCCTTCAGCAAAGCAACAAGCTCAAAAAATTCTCCAGGGAGCAGCAAGGGGAGAGCTGGAAGAGGAAAGGGAACTTTTCGCGGAAGAATGTCTGATGATAATCATTGGTTTTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCTACCATATGCCAGATTTGCAATCAACAGCCGCGATGA 1752 0.4458 MDSEDDMHDANDIESLDDDFYSGETEDAPIDYYSDYDDDADDYFEDADRVESRRPEQNFTILKESDIRLRQEEDITRVATVLSISRVSASILLRHYNWSVSKVHDAWFADEDGVRKAVGLLETPVVQHSNARELTCGICFENYPRARIEMASCGHPYCVSCWEGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLASKEDKHKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVGKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEQLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAAFSKATSSKNSPGSSKGRAGRGKGTFRGRMSDDNHWFCEHCTYANVKSATICQICNQQPR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00032 583 MobiDBLite consensus disorder prediction 524 538 - -
Gabi3417g00032 583 SMART zf_4 557 581 IPR001876 -
Gabi3417g00032 583 MobiDBLite consensus disorder prediction 524 550 - -
Gabi3417g00032 583 FunFam RBR-type E3 ubiquitin transferase 268 518 - -
Gabi3417g00032 583 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Gabi3417g00032 583 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Gabi3417g00032 583 ProSitePatterns Zinc finger RanBP2-type signature. 559 578 IPR001876 -
Gabi3417g00032 583 SUPERFAMILY RING/U-box 286 334 - -
Gabi3417g00032 583 SUPERFAMILY RING/U-box 206 274 - -
Gabi3417g00032 583 Pfam Ariadne domain 354 515 IPR045840 -
Gabi3417g00032 583 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 433 IPR031127 GO:0004842|GO:0016567
Gabi3417g00032 583 CDD RING-HC_ARI6-like 133 194 - -
Gabi3417g00032 583 Gene3D - 263 518 - -
Gabi3417g00032 583 CDD BRcat_RBR_ANKIB1 212 276 - -
Gabi3417g00032 583 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Gabi3417g00032 583 MobiDBLite consensus disorder prediction 1 36 - -
Gabi3417g00032 583 SUPERFAMILY Ran binding protein zinc finger-like 555 580 IPR036443 -
Gabi3417g00032 583 CDD Rcat_RBR_ARI7-like 290 344 - -
Gabi3417g00032 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Gabi3417g00032 583 Pfam IBR domain, a half RING-finger domain 206 267 IPR002867 GO:0008270
Gabi3417g00032 583 Pfam IBR domain, a half RING-finger domain 284 332 IPR002867 GO:0008270
Gabi3417g00032 583 SUPERFAMILY RING/U-box 132 217 - -
Gabi3417g00032 583 SMART ibrneu5 205 267 IPR002867 GO:0008270
Gabi3417g00032 583 SMART ibrneu5 280 341 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00032 Gabi-Chr3417 473167 481204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00032 17 578 ARIADNE family AT1G65430 71.204 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00032 K11968 - gmx:100784195 1122.07