Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00031 ATGGACTCCGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTTGACGACGATTTCTACAGTGGCGAGACCGAGGATGCTCCCATTGATTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGAAGATGCCGATAGGCAAAATTTCACCATCTTGAAGGAATCCGATATCCGATTAAGACAAGAAGAAGACATCACAAGAGTAGCAACGGTTCTTTCCATTTCAAGAGTTTCTGCCAGCATACTACTTCGTCACTACAATTGGAGCGTCAGTAAAGTCCATGATGCATGGTTTGCTGATGAAGATGGAGTCCGAAAAGCAGTTGGCTTGTTGGAGACGCCAGTTGTCCAGCATTCTAATGCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAATGGCTTCTTGTGGTCATCCCTACTGTGTCTCATGCTGGGAAGGATATATTGGCACGTCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAGGATATGATTAATCTATTAGCATCCAAAGAAGATAAACATAAGTATGCCCGGTATCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCCGCTCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTCAGTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCACCGTCCAGTAGACTGTGGCACTGTGGGAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCACCGTGTAAATTTGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCCTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGCAGCTTAGTGACACGCAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCGTATGGGTTCTATTTACCTGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAGCCATTCCTCAGTGCTGATGGCCCATCCAAAGAATTCAACGACTTTCGGACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTTAGGGCATTAGAGAATGGTCTATCTGATGTGGATAGTAATGGAGCTGCCTTCAGCAAAGCAACAAGCTCAAAAAATTCTCCAGGGAGCAGCAAGGGGAGAGCTGGAAGAGGAAAGGGAACTTTTCGCGGAAGAATGTCTGATGATAATCATTGGTTTTGTGAGCATTGTACCTATGCAAATGTCAAATCTGCTACCATATGCCAGATTTGCAATCAACAGCCGCGATGA 1731 0.4431 MDSEDDMHDANDIESLDDDFYSGETEDAPIDYYSDYDDDADDYFEDADRQNFTILKESDIRLRQEEDITRVATVLSISRVSASILLRHYNWSVSKVHDAWFADEDGVRKAVGLLETPVVQHSNARELTCGICFENYPRARIEMASCGHPYCVSCWEGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLASKEDKHKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVGKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEQLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAAFSKATSSKNSPGSSKGRAGRGKGTFRGRMSDDNHWFCEHCTYANVKSATICQICNQQPR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00031 576 CDD Rcat_RBR_ARI7-like 283 337 - -
Gabi3417g00031 576 Gene3D - 256 511 - -
Gabi3417g00031 576 SUPERFAMILY RING/U-box 279 327 - -
Gabi3417g00031 576 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 426 IPR031127 GO:0004842|GO:0016567
Gabi3417g00031 576 SUPERFAMILY RING/U-box 199 267 - -
Gabi3417g00031 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 209 IPR013083 -
Gabi3417g00031 576 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3417g00031 576 Pfam IBR domain, a half RING-finger domain 277 325 IPR002867 GO:0008270
Gabi3417g00031 576 Pfam IBR domain, a half RING-finger domain 199 260 IPR002867 GO:0008270
Gabi3417g00031 576 SUPERFAMILY RING/U-box 125 210 - -
Gabi3417g00031 576 FunFam RBR-type E3 ubiquitin transferase 261 511 - -
Gabi3417g00031 576 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Gabi3417g00031 576 SUPERFAMILY Ran binding protein zinc finger-like 548 573 IPR036443 -
Gabi3417g00031 576 MobiDBLite consensus disorder prediction 517 531 - -
Gabi3417g00031 576 CDD BRcat_RBR_ANKIB1 205 269 - -
Gabi3417g00031 576 ProSiteProfiles TRIAD supradomain profile. 125 338 IPR044066 -
Gabi3417g00031 576 SMART ibrneu5 273 334 IPR002867 GO:0008270
Gabi3417g00031 576 SMART ibrneu5 198 260 IPR002867 GO:0008270
Gabi3417g00031 576 SMART zf_4 550 574 IPR001876 -
Gabi3417g00031 576 Pfam Ariadne domain 347 508 IPR045840 -
Gabi3417g00031 576 MobiDBLite consensus disorder prediction 517 543 - -
Gabi3417g00031 576 FunFam RBR-type E3 ubiquitin transferase 123 212 - -
Gabi3417g00031 576 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00031 Gabi-Chr3417 473166 481204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00031 17 571 ARIADNE family AT1G65430 70.681 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00031 K11968 - gmx:100784195 1102.04