Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00028 ATGGGAAGCTGCATATCAACGCAAGGGAAAACGGTTACACGAAAGAGGAAGGATCTAAACAAACCAAAGAGCTATCATAGTTATGAGGTCGTAACAACACCGACGGCGGCGGCGCGTAGGTCGAGCGTGACGGCGCGTATTCCCGTGAACGTGGTTTCGAACCCGAGTGCTGGGAACATATTTGACAAGTACCAGTTGGGGAAGGAGCTTGGGCGAGGTGAGTTCGGGGTGACGCATCGGTGTGTGGAGATTGGAACGGGTGAGGCATTTGCGTGTAAGAAGATAGCGAAGACGAAGCTGAGAACGGAGATAGATGTACAAGATGTGAAGAGAGAGGTGCAGATCATGAGGCATTTGCCTAAACACCCAAACATTGTTTCCTTCAGAGAGGCATATGAGGATAGAGACGCTGTTTACCTTGTCATGGAGCTTTGCGAAGGTGGCGAACTCTTTGATAGGATCGTAGCCAAAGGCCATTACACCGAGCGTGCCGCTGCTAATGTTATCAAGACCATTCTTGAAGTTTGCAAGGTGTGCCATGAGCATGGCGTGATACATAGGGACTTAAAACCTGAGAATTTCTTATTTGCTGATGGAACGGAGGGTTCTTCATTAAAGGCAATTGATTTTGGGCTTTCCACCTTCTATGTGCCTGGAGAAAGATTCAATGAAATTGTTGGAAGTCCCTATTACATGGCTCCTGAGGTTTTAAGACGTAACTACGGAACTGAAATTGATATTTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACTGAGGAAGGGATTGCCCAGGCTATCATCCGGGGTAATATAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGACGAAGCCATAGACCTTGTTAAGCGTATGCTTGATCCAAATCCATACACCCGGATAACAGTTCAAGAAGTCCTTGAACATTCCTGGATACAACATAGGGAGCATGGTCGAAATATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTTCTTCAAGTGGTGGCCGATAACCTGCCAGATGAGCAAGTAGATGGGTTTAAGCAAATGTTTGATATGATGGACAAGGACAAAAACGGAAACTTGTCATTTGACGAGCTCAAAGATGGCCTTTCAATGATTGGACATGCTATTCCTGATCCTGATGTCCAGATGTTAATGGATGCTGCAGATATTGATGGAAACGGCACCCTTAATTGTGAAGAGTTCATCACAATGAGTGTTCATCTGAGAAAGATAGGAAGTGATGAGCATCTCTCTAAAGCATTCAGTTACTTCGACAAGAATCAGAGCGGATATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCTAATGATGACCCAGGAGCCAGTATTAATGACCAAGTGATCAAAGACATTATCAATGATGTCGACTTAGATAAGGATGGTCGAATCAGTTTTGAGGAGTTCAAGGCAATGATGAAGACAGGAGGGGATTGGAAAATGGCTTCTCGGCAGTATTCAAGAGCATTACTAAATGCATTAAGCTTCAGGATGTTTAAAGACAAATCTGATAAGGGTAACTAA 1617 0.4385 MGSCISTQGKTVTRKRKDLNKPKSYHSYEVVTTPTAAARRSSVTARIPVNVVSNPSAGNIFDKYQLGKELGRGEFGVTHRCVEIGTGEAFACKKIAKTKLRTEIDVQDVKREVQIMRHLPKHPNIVSFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVIKTILEVCKVCHEHGVIHRDLKPENFLFADGTEGSSLKAIDFGLSTFYVPGERFNEIVGSPYYMAPEVLRRNYGTEIDIWSTGVILYILLCGVPPFWAETEEGIAQAIIRGNIDFTRDPWPKVSDEAIDLVKRMLDPNPYTRITVQEVLEHSWIQHREHGRNISLGDQVRMRIKQFSLMNRFKKKVLQVVADNLPDEQVDGFKQMFDMMDKDKNGNLSFDELKDGLSMIGHAIPDPDVQMLMDAADIDGNGTLNCEEFITMSVHLRKIGSDEHLSKAFSYFDKNQSGYVEFEELKDALSNDDPGASINDQVIKDIINDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSFRMFKDKSDKGN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00028 538 Gene3D Transferase(Phosphotransferase) domain 1 150 330 - -
Gabi3417g00028 538 SUPERFAMILY Protein kinase-like (PK-like) 60 323 IPR011009 -
Gabi3417g00028 538 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Gabi3417g00028 538 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Gabi3417g00028 538 Pfam EF-hand domain pair 382 432 IPR002048 GO:0005509
Gabi3417g00028 538 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3417g00028 538 FunFam calcium-dependent protein kinase 13 150 330 - -
Gabi3417g00028 538 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Gabi3417g00028 538 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3417g00028 538 SMART efh_1 369 397 IPR002048 GO:0005509
Gabi3417g00028 538 SMART efh_1 405 433 IPR002048 GO:0005509
Gabi3417g00028 538 SMART efh_1 479 507 IPR002048 GO:0005509
Gabi3417g00028 538 SMART efh_1 441 469 IPR002048 GO:0005509
Gabi3417g00028 538 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Gabi3417g00028 538 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Gabi3417g00028 538 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3417g00028 538 FunFam Calcium-dependent protein kinase 1 66 149 - -
Gabi3417g00028 538 FunFam Calcium-dependent protein kinase 7 331 508 - -
Gabi3417g00028 538 SUPERFAMILY EF-hand 351 517 IPR011992 -
Gabi3417g00028 538 CDD STKc_CAMK 63 321 - -
Gabi3417g00028 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Gabi3417g00028 538 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Gabi3417g00028 538 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Gabi3417g00028 538 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Gabi3417g00028 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 497 - -
Gabi3417g00028 538 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Gabi3417g00028 538 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Gabi3417g00028 538 Pfam EF-hand domain pair 440 505 IPR002048 GO:0005509
Gabi3417g00028 538 Gene3D - 331 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00028 Gabi-Chr3417 455231 459810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00028 1 532 EF-hand Containing Proteins AT2G31500 68.646 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3417g00028 Pkinase 6.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00028 K13412 - gmx:100818929 903.279