Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00023 ATGGCTTTGAAGGGGCATGATCTGATAGGAATCGCAGAAACAGGATCAGGGAAGACACTTGCGTACCTGTTGCCTTCCATAGTGCATGTAAATGCTCAGCCAATTCTAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGGGAACTTGCTGTCCTCATACAACAAGAGGCTACTAAATTTGGTTCATCGTCAAAGATTAAGAGTACCTGCATCTGTGGTGGGGTTCCAAAGGGACCTCAGGTGCATGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCTGGGAAGGTTAATTGATATGCTCGAGTCAAATCATACTAATTTGCAGAGGGTCACATACCTTGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAGATTTTGTCTCTCAGGAAATGGTATGTGAAGGATGCGAAATATGTGATAAATTATGACTTCCCGGGATCAGAGGACTATGTTCATTGCATTGGGAGGACTAGAAGTGCTGGTGCAAAAGGAATTGCGTACACATTCTTCACAGCTGCTAATGCCAGATTTGCAATGGGATGCGGTGCACAACGTCCGCCTTCAGGTCACCGAGGTTTCCAAGACCGTGGGAGGGGTTATATGGCAGTGCTCGTCCATGGAGCTGATTGA 672 0.4583 MALKGHDLIGIAETGSGKTLAYLLPSIVHVNAQPILDPGDGPIVLVLAPTRELAVLIQQEATKFGSSSKIKSTCICGGVPKGPQVHDLQKGVEIVIATLGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQIRKILSLRKWYVKDAKYVINYDFPGSEDYVHCIGRTRSAGAKGIAYTFFTAANARFAMGCGAQRPPSGHRGFQDRGRGYMAVLVHGAD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00023 223 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 147 189 - -
Gabi3417g00023 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 147 IPR027417 -
Gabi3417g00023 223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 140 IPR014001 -
Gabi3417g00023 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 191 IPR027417 -
Gabi3417g00023 223 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 120 128 IPR000629 -
Gabi3417g00023 223 Gene3D - 150 199 IPR027417 -
Gabi3417g00023 223 Gene3D - 1 149 IPR027417 -
Gabi3417g00023 223 Pfam DEAD/DEAH box helicase 2 142 IPR011545 GO:0003676|GO:0005524
Gabi3417g00023 223 SMART ultradead3 1 164 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00023 Gabi-Chr3417 362409 363929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00023 3 136 Eukaryotic Initiation Factors Gene Family AT3G19760 32.593 1.60e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00023 K12823 - gmx:100790464 257.299