Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00014 ATGGAGGGAATGCCTAGGCTCCTCCATGGAACAATCGTAGCTACCATCTTCAATGCCTCCTCACCTTACTCACCTTTATTTCCCTTCAATTGCATATGTACCAATGGAAAGCCTGCTTACGTGACCATCAAGATAGATAACAAGAAGGTTGCAAAAACAAGCAAAGAAAGTGATCGTGTCTGGAACCAAACCTTTAAGATTCAATGTGCTCATTCAGCTGATTCAACTATCACCATTACACTGAAAACATCATTTTCCATATTGGGGGAAGTCCATATCCAGGCCCAGCAACTATTAAAGGAAGGAAATTTGATCAATGGGTTCTTCCCTCTCATCATGGAAAATGGAAAACCAAACCCAAAACTTAAGTTAAAGTTTGTATTATGCTTCAAGCCAGCAGAACTGGAACCAAGTTGGGCAAATTTACTAAGCAATGATGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGTCAGGTCAAACTTTATCATGATGCTCATCATTCTTCTGCTTTCCAACCTCCTTTTGATCTATGTGGAGTTCCAAAAAACCTATGGGAGGATGTTTATAAAGCCATTGAGGGTGCAAAGTATATAGTTTATATTGCAGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTAATACAGAAATCCCACATGCCAGAGGAATAAAGTTTGGTGAGCTATTGAATAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACTTCTTTGCCCTTAATTAAGAACAAAGGGGTAATGAACACTCATGATGAGGATGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTTCCCACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACCAAAGCACACAAATCTGTTAATGATAGAGAACTCACGAGCTTTGTGGGTGGATTAGACTTGTGTGATGGCAGATATGACACAGAGCAACATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGACTTCTACCAAACAAACATTGGAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGTGCCATGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTGGGGATGTGTTGACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTCTTCTAGTTCCTGCTAGCACCTTGGCAAATCTTATGCCTAGGACAAGAACAAGCAGTTCAATAGAAAGGGATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTCTCAGCTGGTGACTTGTTTAGAAAGTTAACTGTGGAGAGGAGCATCCATGAAGCTTATGTGGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAACCAATATTTCATTGGGGGATGCCATTGGTGGGAGAAAGATAGGCATTGTGGCTGCACAAATCTAATTCCCATCGAAATTGCACTCAAGGTGGTTAATAAGATTAAAGCAAAGAAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAATCCGTTCAAGATATACTACATTGGACTAGAGAAACAATGGAAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGGGAACCAGGACACCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGGGAGCAAAAGGGACAAGGGGAGTATCTTCCTCCAGATTTTCCACATCCTGAAACACAATACTGGAATGCTCAAAAAAATAGGAGATTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATACATTTTAATAGGATCAGCTAATGTGAACCAAAGATCCATGGACGGGGAAAGGGACACTGAGATTGCCATAGGATGCTACCAGTCTCAAGATGGAGCTGATAACCAAATGAGCCTTGGTGATATTCATGCATACAGAATGTCACTATGGTATGAGCACACCAATAGTGCCCAAGAATTGTTCTTAAAGCCAGAATGTTTGGAATGTGTGCAGAGGATGCGCTCAATAGGAGATCAAATGTGGGAAATCTACAACAGTGAAGAAATTGTGGACATGAAAGGTGTTCACCTTGTAACATACCCTGTGAGGATTACACAAGAAGGGTATGTCAAGGACATGATTGATGGAATTCATTTTCCTGATACAAATTCTCTAGTTAAGGGGAAGAGATCTAAAATGTTGCCCCCTGACTTAACAACTTAG 2280 0.4132 MEGMPRLLHGTIVATIFNASSPYSPLFPFNCICTNGKPAYVTIKIDNKKVAKTSKESDRVWNQTFKIQCAHSADSTITITLKTSFSILGEVHIQAQQLLKEGNLINGFFPLIMENGKPNPKLKLKFVLCFKPAELEPSWANLLSNDEFQGLRDATFPQRSNCQVKLYHDAHHSSAFQPPFDLCGVPKNLWEDVYKAIEGAKYIVYIAGWSFNPKMVLVRDPNTEIPHARGIKFGELLNKKAEEGVAVRVMLWDDETSLPLIKNKGVMNTHDEDAFAYFNHTKVICRKCPRLHHKFPTLFAHHQKTITVDTKAHKSVNDRELTSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTNIGGASLNKGGPRVPWHDAHACVTGEAAGDVLTNFEQRWTKQCDPSLLVPASTLANLMPRTRTSSSIERDWKVQVYRSIDHVSAGDLFRKLTVERSIHEAYVEAIRRAERFIYIENQYFIGGCHWWEKDRHCGCTNLIPIEIALKVVNKIKAKKRFAVYIVIPMWPEGVPESESVQDILHWTRETMEMMYRLIGEAIQESGEPGHPRDYLNFFCLANREQKGQGEYLPPDFPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQSQDGADNQMSLGDIHAYRMSLWYEHTNSAQELFLKPECLECVQRMRSIGDQMWEIYNSEEIVDMKGVHLVTYPVRITQEGYVKDMIDGIHFPDTNSLVKGKRSKMLPPDLTT 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00014 759 Pfam C2 domain 39 111 IPR000008 -
Gabi3417g00014 759 Gene3D Endonuclease Chain A 179 428 - -
Gabi3417g00014 759 SUPERFAMILY Phospholipase D/nuclease 148 408 - -
Gabi3417g00014 759 Pfam Phospholipase D Active site motif 298 334 IPR001736 GO:0003824
Gabi3417g00014 759 Pfam Phospholipase D Active site motif 608 632 IPR001736 GO:0003824
Gabi3417g00014 759 Gene3D Endonuclease Chain A 448 655 - -
Gabi3417g00014 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 297 334 IPR001736 GO:0003824
Gabi3417g00014 759 PIRSF PLD_plant 30 759 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3417g00014 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 605 632 IPR001736 GO:0003824
Gabi3417g00014 759 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 34 126 IPR035892 -
Gabi3417g00014 759 CDD PLDc_pPLD_like_2 447 649 - -
Gabi3417g00014 759 SMART pld_4 605 632 IPR001736 GO:0003824
Gabi3417g00014 759 SMART pld_4 297 334 IPR001736 GO:0003824
Gabi3417g00014 759 Pfam Phospholipase D C terminal 678 748 IPR024632 -
Gabi3417g00014 759 SUPERFAMILY Phospholipase D/nuclease 422 689 - -
Gabi3417g00014 759 Gene3D C2 domain 33 131 IPR035892 -
Gabi3417g00014 759 PANTHER PHOSPHOLIPASE D 36 740 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00014 Gabi-Chr3417 331469 334413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00014 31 759 Phospholipase D Gene Family (Wang group) AT1G55180 63.747 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00014 K01115 - gmx:100812642 1355.12