Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00011 ATGAGTCGAGAGCTACAGAAGCGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTTAAGGCATCAAGGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTTACTCATGTTGTTCAACCTGGAGATTGCATTACACTGCTTGTGGTTGTGCCTTCACAAAGTTCAGGCAAAAGATTATGGGGTTTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATGAAGAAGTACCCTCCAGGAACAATTTCAGAGCAGAAGAGTGATATAACAGATTGTTGCTCTCAGATGATCCTTCAGCTTCATGATGTCTATGATCCAAATAAGATAAATGTCAGGATTAAAATTGTTTCTGGATCACCGTGTGGAGCAGTGGCTGCAGAAGCCAAGAAAGCACAAGCCAACTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAGTTGCAATGTAACATTGTGGTTATGAAGCGTTCTCAACCCAAAGTACTAAGGTTGAATTTGATTGGACCACAAAAGAAGGGTGTTGAAGAAGCAGGTTTATCACCTTCTGAGCAAGATGATATGCCTGAAAAGAGAACCAAAAAGAAGATTGATTACTTGAATTCCATCAAAGGACCTGCTGTGACTCCAACTAGCAGCCCTGAGCTAGGGACACCCTTCACTGCAACTGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTTATCTCAGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATCATGGAAAATCAAGAACCTGGTGATACTAATTCAGACACAGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACAGAATTAATTTTACACCAACAATCATCTCAACAAAATGAAGAAAGATCAGAGATATCTCATGACATGCCTCAAGCATCTACCACCAGAGGTTTGCTAGAAAAGTTTTCTAGGCATGATGGAGGAACTGGAATTCAAATCTCAACCTATAGAACTGACTCGGATTTCAGTGGAAATTTGAGAGAAGCAATAGCATTATCAAGAAATGTACCACCTGGTCCACCTCCATTGTGTTCAATATGTCAGCACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTAGAACTTGCAACTGGTGGATTTTCAAAAGCCAACTTCTTGGCAGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATGTTGAATTTTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGGTTTTGTATAGAGGATAAGAGAAGACTATTGGTTTATGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAAAGGGATCCATTAGAATGGTCTGCACGGCAAAAAATTGCTGTCGGAGCCGCTCGTGGATTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGAGATTTTGGCTTGGCAAGATGGCAGCCTGATGGAGACACGGGTGTGGAAACTAGAGTAATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATCACTGAAAAAGCAGATGTTTATTCCTTTGGGGTGGTACTAGTAGAGCTTGTTACAGGTAGAAAAGCTGTGGATCTCACTAGGCCCAAGGGACAGCAGTGCCTTACTGAATGGGCACGACCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAATGCTGGGTAACCACTATTTAGAACATGAGGTTTATTGCATGCTGCATGCTGCATCATTATGCATACGACGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTAGAATACTGGAGGGTGACATGGTGATGGACACAAATTACATTTCAACACCAGGTTATGATGTGGGAAACAGGAGTGGTCGAATCTGGTCAGAGCCACTACAGAGACAGCAACATTACAGTGGTCCCTTGTTAGAAGACTCATTCAGTGGGAAGTTATCTCTTGACAAATACAAGCCTTCCTATTGGGATAGGGACAAGGCTAGGACTAAGAGGGCTCCATGTGAAGATAACATTTAA 2247 0.4308 MSRELQKRGKQEKGSDGAEKVIVAVKASREIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGKRLWGFPRFAGDCASGMKKYPPGTISEQKSDITDCCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKGVEEAGLSPSEQDDMPEKRTKKKIDYLNSIKGPAVTPTSSPELGTPFTATEAGTSSVSSSDPGTSPFFISEMNGESKKEETIMENQEPGDTNSDTESESLSTSSASLRFQPWITELILHQQSSQQNEERSEISHDMPQASTTRGLLEKFSRHDGGTGIQISTYRTDSDFSGNLREAIALSRNVPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSKANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPMLGNHYLEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQQHYSGPLLEDSFSGKLSLDKYKPSYWDRDKARTKRAPCEDNI 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00011 748 PANTHER OS01G0750732 PROTEIN 268 681 - -
Gabi3417g00011 748 SUPERFAMILY Protein kinase-like (PK-like) 387 682 IPR011009 -
Gabi3417g00011 748 MobiDBLite consensus disorder prediction 303 322 - -
Gabi3417g00011 748 Pfam Protein tyrosine and serine/threonine kinase 407 672 IPR001245 GO:0004672|GO:0006468
Gabi3417g00011 748 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
Gabi3417g00011 748 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Gabi3417g00011 748 MobiDBLite consensus disorder prediction 211 288 - -
Gabi3417g00011 748 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 682 - -
Gabi3417g00011 748 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3417g00011 748 FunFam Dual-specific kinase DSK1-like 12 166 - -
Gabi3417g00011 748 MobiDBLite consensus disorder prediction 215 254 - -
Gabi3417g00011 748 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Gabi3417g00011 748 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Gabi3417g00011 748 MobiDBLite consensus disorder prediction 269 288 - -
Gabi3417g00011 748 CDD STKc_IRAK 409 675 - -
Gabi3417g00011 748 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00011 Gabi-Chr3417 309109 313464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00011 383 692 Trihelix Transcription Factor Family AT1G70460 51.875 1.31e-101 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi3417g00011 PK_Tyr_Ser-Thr 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00011 - - gmx:100816340 1357.04