Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3417g00008 ATGGAAGGTGTCTTCTCTCTCCCTGTGGCAGCCAGAACTGATTTTCTCCACTCTCTAGTGCAGTCTTTTGGCTGCGAGTACATTTGTCTATGGGCATATGATTCCAATTCACCAAATCGTTTGTCCTTCTTGGATGGTTTCTATAATGTAAGAGACAACCAAGCAAGCTCTTCTTGGGGGACTTTAGCACAAAGTCTTTTTAACCAATACCGGAGTTTAACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGACTCAGCTTCCTTACCTAGAGCTCCAACAATTAGAACTTCTCAGATTGGCATCAACAGAAATACAAACACAATTCTTTCAGGAAGCAAGGATCAAGACTGCTATATTCATGGGGTGCAACAGAGGGGAAATTGAGCTTGGTTTCTCAAATATGTCACAAGCTGACATTCAAACAACACTAAGGAGTTTGTTTCCTGAAGATTTTTCTAGACAGTCCCAACAAATTGATCAGAATCCACCTTCATCATCTTCATCATCTTTGAGATCAATATCTACAGGTAGCCCTGAATACTCATCTCTGATATTCAGTATTCCAGGAACTTCCCAATCCCATTTTCCTGAGACCATTGGAGGAGTGCTTCCAATGCCACATGTGTCAAACACAGCAACTAGCCCTCACCAACAAGCAATCCAAGCAATGTCTCAAGTCACTCCAAGTCAGTTCCCCACACCAGAAACTGAACATGATGCAATAATGAGAGCAATCCTCTATGTTTTATCTTCACCTTCTCATCAGCAACAAAACCAGCAAAACTTGCCTTATACTTCTGTGGTGCATCCAGAAGCTAGTGCTTTCCAAAGGTATAGACCAGATATAGGTCCTAATATTGGGTCCAATTTCCGAAGACAAAGCCTTATGAAGAGATCGTTTGCATTCTTTAGAAGCTTGAATTTCATGAGAATGAGAGAAAGCATTCAAGCAACACGTCCCACTAGTACTCAGATGCATCATATGATATCAGAGAGAAGAAGACGTGAGAAACTAAATGAGAATTTTCAGGGACTTAGAGCATTACTTCCTCCTGGAACTAAGAAAGACAAAGCGTCGATACTGACAACAGCAAAGGAGACATTGAGCTCTTTGATAGCTGAAATTGACAAGCTAAGAAGAAAAAATCAGGAGTTGACGCCACTTTTGAGAACTAAAGAATCTACAACTGAAGAAACCAAAGCTAGCTTCTCATCAAATGAAAGATTAAATGTACAAGTTTCACATGTACCAGAATCAAGCTCATCACAAGAGAGAATGGTGGACTTGCATGTGTCTGTGAGAGGACAAATTTCTCAAGTTGATATATTGATCCGATTATTGGAATTCTTAAAACAAGATCAACACTTGAATTTGGTTTCCATGGGCGAAAATACTCATATTGCTGAAGGGAATTCCCTTCATCAACTAACCTTCAGACTAAGGATTATTCAGGGAAGTGAATGGGACGAGTCTGGCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATACAGTACCAAGTGGACCAATAG 1551 0.4062 MEGVFSLPVAARTDFLHSLVQSFGCEYICLWAYDSNSPNRLSFLDGFYNVRDNQASSSWGTLAQSLFNQYRSLTFDVNDDRVPGLAFRTQLPYLELQQLELLRLASTEIQTQFFQEARIKTAIFMGCNRGEIELGFSNMSQADIQTTLRSLFPEDFSRQSQQIDQNPPSSSSSSLRSISTGSPEYSSLIFSIPGTSQSHFPETIGGVLPMPHVSNTATSPHQQAIQAMSQVTPSQFPTPETEHDAIMRAILYVLSSPSHQQQNQQNLPYTSVVHPEASAFQRYRPDIGPNIGSNFRRQSLMKRSFAFFRSLNFMRMRESIQATRPTSTQMHHMISERRRREKLNENFQGLRALLPPGTKKDKASILTTAKETLSSLIAEIDKLRRKNQELTPLLRTKESTTEETKASFSSNERLNVQVSHVPESSSSQERMVDLHVSVRGQISQVDILIRLLEFLKQDQHLNLVSMGENTHIAEGNSLHQLTFRLRIIQGSEWDESGFQEAVRRVVADLIQYQVDQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3417g00008 516 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 105 508 IPR044658 -
Gabi3417g00008 516 MobiDBLite consensus disorder prediction 157 179 - -
Gabi3417g00008 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Gabi3417g00008 516 Gene3D - 326 402 IPR036638 GO:0046983
Gabi3417g00008 516 SMART finulus 333 382 IPR011598 GO:0046983
Gabi3417g00008 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 392 IPR036638 GO:0046983
Gabi3417g00008 516 Coils Coil 366 386 - -
Gabi3417g00008 516 Pfam Helix-loop-helix DNA-binding domain 330 376 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3417g00008 Gabi-Chr3417 146933 151277 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3417g00008 12 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.431 2.13e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3417g00008 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3417g00008 - - gmx:100798452 704.131