Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00033 ATGGGGAAACTCGAACTGGGTTTTGGAGGTTCTTTGGTATTTCGTCTTCTTTTGTTGGTTTCTGTTATGGTTGTTTCTGTTCAATGTCAGGATGCAGAGGTGATGAACATGCTGAAAAACATGATCAATGCCCCCATTAGCTTCCAATGGACAGACACTGATGTATGCAAATGGAGGCACATTCAATGTGATTCAGGAAAACGTGTTACCGCCATTCAAATTGGGAACCAGAACCTTCATGGCTCTCTCCCCAAGGAACTGGAGAAGCTCACAGAATTGGAACGTTTCGAGTGTCAAGGCAACAGTCTCACAGGGCCATTCCCTTACCTTTCAAAATCCTTACAGAGGCTGATAATCCGTGACAACAATTTTACCTCCATACCAAGCGATTTCTTCAAAGGCATGGATAGTTTGCAAGAAGTGAGAATCGACGACAACCCTTTCCCTCGGTGGCCGATTCCTGACACTCTTAAGGATTGTGTTGGACTTCAAAGTTTTAGTGCTCAGAGTGTCGGCTTTGTTGGGACAATCCCAGATATTTTTGGCAGAGATGGTCCCTTGACAGGTTTGGTTTATTTGGCTTTGTCTGGTAATTCTCTAGAAGGTCCTTTGCCTGCAAGTCTCTCGTATAGTTCAATCGAGAACCTTTTGTTGAATGGACAGACTAGCGCCTCTAAACTCAATGGTACCCTCGCTGTTGTACAGAACATGACATCTCTGAAGCAAATTTGGGTTAATGATAATGCATTTACTGGTCCTGTACCAGACTTGTCACACCATGATCAACTGTTTGACGTAAACTTAAGGGATAACCAGTTTACTGGTGTTGTTCCACCCTCCCTAACGGGTCTTCCAAGTCTTCAGGTTGTGAACTTAACCAATAATTATCTTCAAGGATCCCCTCCCATGTTCAAAACTGGGGTAGCTGTTGACAATAATATGGATGGGGGGAGAAATCAATTTTGCACAAAGGTGCCTGGGCAGCCATGCAGTCCCCTTGTAAATGCTTTACTGTCTATTGTTGAACCTTTGGGTTATCCTCTCAGGTTTGCTGAAAGTTGGGAGGGTAATGATCCATGTGCTAATAAATGGACTGGGATAGTTTGCTCTGGTGGAAACATTTCTGTTATCAACTTTCAGAACATGGGTCTATCCGGCACGATTTCTCCTAATTTTGCCAGCCTTACATCAGTGACAAAATTGCTTCTTTCTAACAATGGTCTCGCTGGTACCATACCAAGAGAACTTACTAGTATGCCTCTTCTGCAAGAGTTAGATGTTTCCAATAATAATTTATATGGCCACGTACCACCTTTCCATGATGGTATGGTTGTTAAATTTGGTGGGAATCCTGATATTGGAAAGGATAAACCCACTTCTCAAATTGGCTCGGGCTCTGGAGGCAATGATAAGAAACTCAGTGCTGGAGCCATTGTTGGAGTTGTGGTGGGGTTTGTCTTTTTACTTGTTCTTGGAGTTCTAATATTTCTTAAGTTCCGGAGAAAGTTGAAGCATGCTGGAAAAGTTCAAAATCCAACTGGAATTGTGGTACATCCTCGTCATTATGGGGATGGAAATGCTAGGAAGATAAGTGTTACGGGTGCTGGTGTTGGTGGTGAAGGAACTGCTGCATTAAGCCCCAATTCTAATGTCTATCAGGTGGAAGCTGGTAATATGTTAATTTCAATTCAAGTTTTGAGAGAAGTTACCAACAATTTTAGTGAAGAAAACATATTGGGGAAGGGGGGTTTCGGAACTGTATACAAAGGAGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCGGGAATGGTAGATGAGAAAGGGCAGAATGAGTTCATGGCTGAAATTGCAGTGCTTACTAAGGTTCGACATAGACATTTGGTTGCACTCCTGGGTTATTGCTTGGATGGAAACGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGTGCTCTAAGTAAACATTTGTTCAACTGGAAAGTGGAAGGGATAAAACCACTAGAATGGAAGACTAGGCTTTCTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCTCAACAAATTTTTATCCACAGGGATCTCAAACCATCCAACATTTTGCTGGGAGATGATATGAGGGCTAAAGTGTCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGAAAAACCTCATTTCAAACTAGACTTGCTGGAACTTTTGGATACCTGGCACCAGAGTACGCAGCTACTGGTCGACTTACAACAAAGGTTGATGTATATAGTTTCGGAGTGATTCTTATGGAGATGATGACTGGAAGGAAAGCACTTGATGAGAGCCAATCAGAAGAGAACATCCACCTTGTTACATGGTTCCGTAGGATGCTACTGAACAAAGATTCAATTCGAACGATCATCGACCCAACAATCGAAGTTGATGAGGAAACCTTAGCAAGTATTAGCACTGTTGCAGAGTTAGCAGGGCACTGCAGTGCAAGGGAGCCATATCAGCGTCCTGACATGAGTCATGCAGTGAATGTGCTATCACCTCTTGTTGAGGTATGGAAGCCTTCAGAACCAGATGCTGATGACATATATGGGATCAACTTTGATATGACATTACCACAAGCACTCCAAAGGTGGCAGGCATTTGAAGGAAAGAGCACCCTGGATTGTACTACTACTTCTCCTTCACCATTGCATACTAGTGGAGACAACACCACTCACCCATCTGCATAA 2742 0.43 MGKLELGFGGSLVFRLLLLVSVMVVSVQCQDAEVMNMLKNMINAPISFQWTDTDVCKWRHIQCDSGKRVTAIQIGNQNLHGSLPKELEKLTELERFECQGNSLTGPFPYLSKSLQRLIIRDNNFTSIPSDFFKGMDSLQEVRIDDNPFPRWPIPDTLKDCVGLQSFSAQSVGFVGTIPDIFGRDGPLTGLVYLALSGNSLEGPLPASLSYSSIENLLLNGQTSASKLNGTLAVVQNMTSLKQIWVNDNAFTGPVPDLSHHDQLFDVNLRDNQFTGVVPPSLTGLPSLQVVNLTNNYLQGSPPMFKTGVAVDNNMDGGRNQFCTKVPGQPCSPLVNALLSIVEPLGYPLRFAESWEGNDPCANKWTGIVCSGGNISVINFQNMGLSGTISPNFASLTSVTKLLLSNNGLAGTIPRELTSMPLLQELDVSNNNLYGHVPPFHDGMVVKFGGNPDIGKDKPTSQIGSGSGGNDKKLSAGAIVGVVVGFVFLLVLGVLIFLKFRRKLKHAGKVQNPTGIVVHPRHYGDGNARKISVTGAGVGGEGTAALSPNSNVYQVEAGNMLISIQVLREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMQSGMVDEKGQNEFMAEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGALSKHLFNWKVEGIKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYLAPEYAATGRLTTKVDVYSFGVILMEMMTGRKALDESQSEENIHLVTWFRRMLLNKDSIRTIIDPTIEVDEETLASISTVAELAGHCSAREPYQRPDMSHAVNVLSPLVEVWKPSEPDADDIYGINFDMTLPQALQRWQAFEGKSTLDCTTTSPSPLHTSGDNTTHPSA 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00033 913 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3416g00033 913 FunFam receptor protein kinase TMK1 538 650 - -
Gabi3416g00033 913 Gene3D Transferase(Phosphotransferase) domain 1 651 865 - -
Gabi3416g00033 913 CDD STKc_IRAK 579 852 - -
Gabi3416g00033 913 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3416g00033 913 MobiDBLite consensus disorder prediction 890 913 - -
Gabi3416g00033 913 Pfam Protein kinase domain 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3416g00033 913 Gene3D Ribonuclease Inhibitor 29 328 IPR032675 -
Gabi3416g00033 913 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Gabi3416g00033 913 PANTHER OSJNBA0070M12.3 PROTEIN 14 897 - -
Gabi3416g00033 913 FunFam receptor protein kinase TMK1 651 868 - -
Gabi3416g00033 913 SUPERFAMILY L domain-like 334 440 - -
Gabi3416g00033 913 FunFam Receptor-like kinase TMK4 29 327 - -
Gabi3416g00033 913 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Gabi3416g00033 913 Pfam Leucine rich repeat N-terminal domain 30 64 IPR013210 -
Gabi3416g00033 913 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Gabi3416g00033 913 SUPERFAMILY Protein kinase-like (PK-like) 549 859 IPR011009 -
Gabi3416g00033 913 SUPERFAMILY L domain-like 31 305 - -
Gabi3416g00033 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Gabi3416g00033 913 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Gabi3416g00033 913 Gene3D Phosphorylase Kinase; domain 1 541 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00033 Gabi-Chr3416 378555 381742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00033 69 855 Receptor kinase-like Gene Family AT5G07280 31.566 2.24e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi3416g00033 Pkinase 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00033 K00924 - gmx:100788903 1320.06