Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00032 ATGTCGGACGAGGAACACCATTTTGAGTCCAAGGCTGATGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCTGGCACCATTCGCAAAAACGGTTACATCGTCATCAAGGCTCGCCCCTGCAAGGTTGTTGAAGTTTCAACTTCCAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACTGGCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCGTGTGAATCGTATTGACTACCAGTTGATTGATATTTATGAGGATGGATTTGTGGGCCTGCTTACTGATAATGGTGGCACCAAGGATGACCTGAGGCTTCCAACTGATGAGAGTCTGCTTACTCAGCTTCAAAGAATCAGCTTCTTCGTTCTGTCTTTGATGGAATAA 420 0.4619 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPRVNRIDYQLIDIYEDGFVGLLTDNGGTKDDLRLPTDESLLTQLQRISFFVLSLME 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00032 139 PIRSF Transl_init_eIF5A 1 133 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi3416g00032 139 Gene3D - 1 85 IPR014722 -
Gabi3416g00032 139 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3416g00032 139 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Gabi3416g00032 139 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Gabi3416g00032 139 NCBIfam translation initiation factor IF-5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi3416g00032 139 SMART eIF_5a_2 85 139 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi3416g00032 139 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi3416g00032 139 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi3416g00032 139 Gene3D - 86 131 IPR012340 -
Gabi3416g00032 139 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi3416g00032 139 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00032 Gabi-Chr3416 369499 370779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00032 1 129 Eukaryotic Initiation Factors Gene Family AT1G69410 86.047 2.49e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00032 K03263 - ming:122077144 248.054