Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00029 ATGCTTGATGACGATGAGGAATGGCGCCCCACTCCCTCGTCGCTGAATAATAAAAAATCAAGAAAGACAACAAAGAACAATGCATCGTCGTCTTCATCACCGCCAACACCATCACCGCCACAGTCCTCACCAACCCCACCGGTTCTACCTGAGGAATTCAAGAACCATATGAGAGAGCTGAACGGCGGCGGCAGCGAGATGCAATTTGTGATGAGCAAGAATCTCTCCAAGACAGATGTGAGCGCCAAGCACAACCGTCTATCGATGCCTCAGTCAGAAATATGTTGTGATTTCTTGACTGAGGCTGAGAAGGCAACCTTGCATGAGAGGGAAGGAAGGCTTCTTCGGGGTGTGGAAGTGAAGGTGTTGGATCCATCTTTCAGGGAACATACTTTGATACTCAAGAGGTGGGAGATGACAAGTACAAGCATTTACTCTCTCAACAAAGAATGGAAAAGCGTCGTCTCTCAAAACCGTTTGCAAGAAGGAGACCAACTTCAAATCTGGTCTTGTAGAGTCGATGCCCAATTATTTCTTTTATTAAATAAATTAATCTGA 558 0.457 MLDDDEEWRPTPSSLNNKKSRKTTKNNASSSSSPPTPSPPQSSPTPPVLPEEFKNHMRELNGGGSEMQFVMSKNLSKTDVSAKHNRLSMPQSEICCDFLTEAEKATLHEREGRLLRGVEVKVLDPSFREHTLILKRWEMTSTSIYSLNKEWKSVVSQNRLQEGDQLQIWSCRVDAQLFLLLNKLI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00029 185 MobiDBLite consensus disorder prediction 13 32 - -
Gabi3416g00029 185 MobiDBLite consensus disorder prediction 33 47 - -
Gabi3416g00029 185 Gene3D - 63 183 IPR015300 -
Gabi3416g00029 185 Pfam B3 domain-containing protein At2g31720-like 51 156 IPR005508 GO:0003677
Gabi3416g00029 185 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 16 184 IPR005508 GO:0003677
Gabi3416g00029 185 SUPERFAMILY DNA-binding pseudobarrel domain 71 178 IPR015300 -
Gabi3416g00029 185 CDD B3_DNA 73 183 IPR003340 GO:0003677
Gabi3416g00029 185 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00029 Gabi-Chr3416 345331 345888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00029 64 183 B3 DNA Binding Superfamily AT1G05930 30.894 5.56e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00029 - - gmx:102663833 139.813