Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00027 ATGGGTCTTGGTTTGAAGATGCAAAGCCACCACCCTGTGGCTCAGATGAGGTTGCATGAACAAACGGGGAGCAAAAGAAAATACACTTTCATTCAGGCACATAGAGCTTGGCTTCCAAAGTTTCTGCTGCTATGGATCTTGCTGATGGCTCTAATTGGTTGGTGCATCTACAGTAGAATGGATGCTGACACCAAAATCAGAAGGAAAGAGGTTCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCTATTCTTGTATCAACCTTCCATTACTACAGAAACCCTTCTGCCATTGACCAGGAAACCTTTGCAGAATATACAGCCAGGACAGCATTTGAACGGCCATTACTGAGTGGGGTGGCATATGCACAAAGAGTGGTTAACTCGGAGAGAGAAATATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCGGTTATATTTGCTCAAGAAACTCTCTCTCACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAACATTTTGAGGGCAAGGGCCACAGGGAAAGCCGTTCTGACTAGCCCTTTCAGGCTTTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTATGCTCCCTCCAAAGCCAACAACGGAAGAGCTCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGATGTCACAAACTCTACTAACCCCCTAATCATGTATGGCAACCAATATGAAGAAGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACAGCATTCCTATTCTTTGTGATTCTTTTATTAGTGGGTTACATTTTATATGGTGCTGGAAATCATATTGTCAAAGTAGAGGATGATTTCCATAAAATGGAGGTATTAAAAGTCCAAGCAGAAGCAGCTGATGTTGCCAAATCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTCTAGGAATGCTTGGTCTGCTTCTACATACTGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTTCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAACTGGAAGTAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAATCTAGACACAAAGGTTTAGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGGTATTGTTATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAACGAGGACATATATTTGTTAAAGTCCATCTAGCTGAAAATATAAAGTCCACAGTGAATGGAAAATTTGAGACTTATCGTAATGGAGGATCGGATGAACATGTGCATATATCTGGTGGTTATAATAACAAAACCCTAAGTGGATGTGAAGCCGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCTAATTGCCGATGAAGAATTTTTCTTTGATGCTTCAATTGAAAAGGTGGCCTCTGGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGTGTGGAGGACACTGGAATTGGAATTCCTTGCTCAGCCCAAGGTAGGATTTTCATGCCTTTTGTGCAAGCAGACAGCTCGACCTCTCGACACTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCTTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCCCAAGTTGGGAGCACATTTTCATTTACTGCAGATTTTGGATCTTATAAGAAAAATTCGGTAACTGATGTGAAGAAACTTAATTTGGAAGATCTGCCTTCAAGTTTTAGAGGACTTAAAGCCATAGTAGTTGATGGAAAACCTGTTAGAGCAGCTGTGACTAGATACCATTTGAAGAGACTGGGGATACAAGCTAAAGTTGCAAATAGCATAAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGGATTATTTCAGCCAGATATTATTTTTGTTGAGAAGGATTCATGGGTTTCCGGAGAGGATGGGTACTACAATGTGTGGCAACTGGACTGGAAACAGAATGGGCATATGTTTAAGATGCCTCAAATGATCCTTCTTGCGACCAATATCAGCAATGCTGAATTTGATAAAGCTAAAAGCGCAGGTTTTAGTGACACAGTGATTATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAACAAGTTCTGGGGACGGGGAAGAAGAGGCAGCTAGGGAAAGACATGTCTAATGGTTCCACTTTTGTACGAAGCCTTCTTTGTGGAAAGATCATCTTAGTGGTTGATGATAATGCAGTAAATCGGAGGGTTGCTGCAGGTGCTTTAAAAAATTTTGGAGCTGATGTGAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTGCCCCACGATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGACGAATTAGGATGATGGAGAGCGAGGCAAATGAGGAGATGAATAGTGAATGGGGTGAAGGAAATGGCAGGAAAAGTGAGTTCCATGTACCTATATTGGCCATGACAGCTGATGTAATCCATGCTACATACGATGAGTGCTTGAAATGTGGGATGGATGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTCTATCAAGCACTTGCAAAGTTTTTCAAGTCCAAGCCTATCTCAGACTCTTGA 3015 0.4163 MGLGLKMQSHHPVAQMRLHEQTGSKRKYTFIQAHRAWLPKFLLLWILLMALIGWCIYSRMDADTKIRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREIFEKQHGWVIKTMEREPSLVRDEYAPVIFAQETLSHLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSMLPPKPTTEELIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSTNPLIMYGNQYEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHKMEVLKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLHTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEVVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPGIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENIKSTVNGKFETYRNGGSDEHVHISGGYNNKTLSGCEAADERNSWDNFKHLIADEEFFFDASIEKVASGESYEQVTLMVCVEDTGIGIPCSAQGRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGSYKKNSVTDVKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTSGLFQPDIIFVEKDSWVSGEDGYYNVWQLDWKQNGHMFKMPQMILLATNISNAEFDKAKSAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDMSNGSTFVRSLLCGKIILVVDDNAVNRRVAAGALKNFGADVKCAESGKAALEMLQLPHDFDACFMDIQMPEMDGFEATRRIRMMESEANEEMNSEWGEGNGRKSEFHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQALAKFFKSKPISDS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00027 1004 Gene3D - 356 445 - -
Gabi3416g00027 1004 ProSiteProfiles CHASE domain profile. 109 321 IPR006189 -
Gabi3416g00027 1004 SUPERFAMILY CheY-like 700 835 IPR011006 -
Gabi3416g00027 1004 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Gabi3416g00027 1004 CDD HATPase_EvgS-ArcB-TorS-like 499 677 - -
Gabi3416g00027 1004 ProSiteProfiles Histidine kinase domain profile. 389 679 IPR005467 -
Gabi3416g00027 1004 SMART HKATPase_4 494 679 IPR003594 -
Gabi3416g00027 1004 FunFam Histidine kinase 4 354 445 - -
Gabi3416g00027 1004 SMART REC_2 860 992 IPR001789 GO:0000160
Gabi3416g00027 1004 ProSiteProfiles Response regulatory domain profile. 861 996 IPR001789 GO:0000160
Gabi3416g00027 1004 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Gabi3416g00027 1004 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Gabi3416g00027 1004 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Gabi3416g00027 1004 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Gabi3416g00027 1004 Gene3D - 446 681 IPR036890 -
Gabi3416g00027 1004 ProSiteProfiles Response regulatory domain profile. 704 834 IPR001789 GO:0000160
Gabi3416g00027 1004 Pfam Response regulator receiver domain 862 992 IPR001789 GO:0000160
Gabi3416g00027 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 677 IPR003594 -
Gabi3416g00027 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 448 IPR036097 GO:0000155|GO:0007165
Gabi3416g00027 1004 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Gabi3416g00027 1004 Coils Coil 432 452 - -
Gabi3416g00027 1004 SMART CHASE_2 109 294 IPR006189 -
Gabi3416g00027 1004 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Gabi3416g00027 1004 Pfam CHASE domain 112 292 IPR006189 -
Gabi3416g00027 1004 Gene3D - 60 112 - -
Gabi3416g00027 1004 Gene3D - 856 1002 - -
Gabi3416g00027 1004 Gene3D - 698 838 - -
Gabi3416g00027 1004 Gene3D CHASE domain 113 328 IPR042240 -
Gabi3416g00027 1004 FunFam Histidine kinase 4 113 328 - -
Gabi3416g00027 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 994 - -
Gabi3416g00027 1004 SUPERFAMILY CheY-like 859 996 IPR011006 -
Gabi3416g00027 1004 CDD REC_hyHK_CKI1_RcsC-like 862 992 - -
Gabi3416g00027 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 674 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00027 Gabi-Chr3416 329021 340346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00027 23 1004 Histidine Kinase Gene Family AT2G01830 71.342 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3416g00027 HATPase_c 1.2e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00027 K14489 - gmx:100818481 1732.23