Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00025 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCGAAGGTGTGGTGTTATTACTGCGATCGGGAATTCGATGACGAGAAGATCTTAGTGCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCAACCGCTGGCGGCATGGCCATCCACGTTCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAACCTGGGAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTGCTCATTATGGAGATGAAGATGATGAGGTTCCGTCAAAGGCAGCCAAGGTAGATATCCCATCAACCCAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGATATCCTCCTCGATCAACTTTGGGCACAATGCCACCAATGTATAATCCATCTGGACCTGTGCCTTCGAATCCTTGGGTGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAATTCCTCCCCCTGCCCCATACGCACAGCAGCCACTATTTCCTGTGCAGAATGTGAGGCCACCGCTGCCGTCAACTGCTCCTCCTGCACTCCAAACTCAAATTACTCCTCCTGGATTGCCTACATCTACACCTTCTCTCCCAGTTTCACAACCTTTGTTTCCTGTTGTTGGAAATAACCATACAACAGCTCAAAGTTCAACATTCTCTGTGGCACCTCTGTCTTCAAGTGTTCCATCGATAACTCCAGTGTTGTCTACTAATGTCCCTGTTGATGCACATTTGGGTGGCAACTCTTCTCTGACAAGTAGTTATCAGGCAATAGGGATTCCAGGTGGGACAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAACACCGGTGGTCCTTCAATTGGACCTCCCCCAGTAATTGCAAATAAAGCTCCGGCTCCTCAGCCTGCCACTAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTCTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCTGGTCGTATGGCATTTTAA 1122 0.4848 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEDDEVPSKAAKVDIPSTQLVGGMVPPPLGTGYPPRSTLGTMPPMYNPSGPVPSNPWVVPPRPQPWFSQPPAVSIPPPAPYAQQPLFPVQNVRPPLPSTAPPALQTQITPPGLPTSTPSLPVSQPLFPVVGNNHTTAQSSTFSVAPLSSSVPSITPVLSTNVPVDAHLGGNSSLTSSYQAIGIPGGTASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00025 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Gabi3416g00025 373 Gene3D Classic Zinc Finger 1 66 - -
Gabi3416g00025 373 SMART c2h2final6 12 35 IPR013087 -
Gabi3416g00025 373 SMART c2h2final6 36 59 IPR013087 -
Gabi3416g00025 373 MobiDBLite consensus disorder prediction 285 306 - -
Gabi3416g00025 373 CDD SUF4-like 13 92 - -
Gabi3416g00025 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Gabi3416g00025 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - -
Gabi3416g00025 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00025 Gabi-Chr3416 297173 300822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00025 1 353 C2H2 Transcription Factor Family AT1G30970 65.395 1.01e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3416g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00025 - - gmx:100819009 668.692