Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00023 ATGCCTGTTATCAAAGAAACAGAAACAGCAGTAGCACAACACATAAAGTGGAGAAAACCCAGGAACCAATTCGGGTTCAGCCACCAACCCATTTCAGAAACAGATCCGAACTTGCAAATCCCTTCCATAATGCAATCCACTCGCTGCAAGTCCACCATTTCCTCTCTGCTTCTATCCACTTTCTCCAACAACACCTCCTCCAATGAAACCACCATCAATGGCAGTGCTCACAGCAGGAAAAAGAGCAACTTTCCTGCATCAACCTTCAGAGGGTTCGGGTGCACCGCCGGTGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCACATCAGCGGATTGGCAAGGGAAGAAAGCAAGAAAAAAGAAGCACAAGAGGAACAGTAGCAAGAAGAACAGTAACAGCGGCAAGGCTTGCCATGGTGGGGTTCTAGATCCTGGTTCTGCTACTTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCGGATGCTGCTGCCTCTGTTGATTGTGTTGTGTCCAGAAAGAATGCATCTGCAAGAGGGAAAATTGATGTTGAGAAGATAACTCACAGGGAGCGTTCATCTTATTTAGGAAGGCGCACTGTCTACCCAGAAACCATGTTGTTTCTGGACACTGATCCTGACATTTCCACAGCACGCTTTGCCTCTGAGTCTTTTGGAACTGCAACATACTATCGCCATATTAGAGATCCTTCCTCTGATGGTTTTCCTGAGATAATGATGCTTCAAGGAAGTCTTCTAATGGGGGGACGGGTAAATTCACACGACCAATTCAGAGACTTGAGACTTGACGTTGATAACATGTCTTATGAGCAATTGCTGGAGCTCGGTGAGAGAATCGGTTATGTGAACACTGGACTTAAAGAAGATGAGATGGGATGCAACATAAGGAAGACTACTAAGCTTCAATTTTTGGATGATGCATCAAAGCATCAAGTTGATAAAAAGTGCATCATTTGTCAGGAGGAGTATGAAGGAGGTGATGAGCTGGGGAGGCTTAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGGTTGCTCAGAAAAATTTCTGCCCAGTGTGTAAGCAACAAGTTGTGGCTCGACGCTGA 1134 0.4603 MPVIKETETAVAQHIKWRKPRNQFGFSHQPISETDPNLQIPSIMQSTRCKSTISSLLLSTFSNNTSSNETTINGSAHSRKKSNFPASTFRGFGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRNSSKKNSNSGKACHGGVLDPGSATCVDFQDVWCGPGIGFSADAAASVDCVVSRKNASARGKIDVEKITHRERSSYLGRRTVYPETMLFLDTDPDISTARFASESFGTATYYRHIRDPSSDGFPEIMMLQGSLLMGGRVNSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGCNIRKTTKLQFLDDASKHQVDKKCIICQEEYEGGDELGRLNCEHSYHFQCIKQWVAQKNFCPVCKQQVVARR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00023 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 375 IPR013083 -
Gabi3416g00023 377 SMART ring_2 329 369 IPR001841 -
Gabi3416g00023 377 FunFam E3 ubiquitin-protein ligase rnf12-A 295 375 - -
Gabi3416g00023 377 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Gabi3416g00023 377 MobiDBLite consensus disorder prediction 116 131 - -
Gabi3416g00023 377 Pfam Ring finger domain 328 370 IPR001841 -
Gabi3416g00023 377 MobiDBLite consensus disorder prediction 112 139 - -
Gabi3416g00023 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 66 373 IPR045191 GO:0061630
Gabi3416g00023 377 SUPERFAMILY RING/U-box 328 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00023 Gabi-Chr3416 276588 280461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00023 1 283 C3H Transcription Factor Family AT1G73760 41.914 2.79e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00023 - - gmx:100819907 545.814