Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00005 ATGGCAGACCTGAATCTATCCAAAAATGTAGCCAATAGATATCTAAAGCAAGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTTTACAGAGCCATTGATACCCACACAGGACATACGGTTGCCATTAAGAAAATTCGACTTGGCAAGCAGAAAGAAGGAGTAAATTTCACGGCTCTTAGAGAAATTAAGTTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTAATTGATGCATTTCCACGTAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGACCGAAATATTTTTCTCTCCCCGGCTGATACAAAATCTTACCTTCAAATGATGCTGAGAGGTCTTGCTTTTTGTCACAAGAAATGGGTTATGCATAGGGATTTGAAGCCAAATAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATTTTTGGAAGCCCGGATAGAAGGTTAACTCATCAGGTCTTCGCTCGATGGTATAGAGCTCCTGAACTATTGTATGGTACCAAGCAATATGGTTCAGGGGTTGATGTTTGGGCAGCAGCTTGTCTATTTGCTGAACTTCTTCTTCGTCGACCCTTTTTGCAGGGTTCAAGTGATATACATCAATTAGGAAAGATTTTTGCAGCATTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTACCTGATTATGTCGAATACCGATATGTTCCTGCTCCCCCTTTGAGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGACCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCACAGGTACTTTTCTTCTGCACCTCTGCCTACTGATCCAGACAAGCTCCCTAGACCTGCCGCCAAGAGGGAATCTAGGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGAAAGTCAAGAAGAGTGATGCCAGGATTGCAAGCAGATAAGGTTGATGGCAATTTTGGTGATTTCAGACAGACGGTTGGTGATGATACAGGCAAGAATGAATCAGCTCCGATGTCTGTATTTGGCTTAAAATCTCCTACAAGACCTACAATTAACAGTGCTGACAGATCACGTTTAAAAAGAAAATTAGTTCTAGAATTCTAA 1200 0.4108 MADLNLSKNVANRYLKQEVLGEGTYGVVYRAIDTHTGHTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPRKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMMLRGLAFCHKKWVMHRDLKPNNLLIGPNGQLKLADFGLARIFGSPDRRLTHQVFARWYRAPELLYGTKQYGSGVDVWAAACLFAELLLRRPFLQGSSDIHQLGKIFAAFGTPTPSQWPDMVYLPDYVEYRYVPAPPLSSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPDKLPRPAAKRESRASDFNLQEGPTVLSPPRKSRRVMPGLQADKVDGNFGDFRQTVGDDTGKNESAPMSVFGLKSPTRPTINSADRSRLKRKLVLEF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00005 399 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Gabi3416g00005 399 Pfam Protein kinase domain 15 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3416g00005 399 MobiDBLite consensus disorder prediction 294 387 - -
Gabi3416g00005 399 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gabi3416g00005 399 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Gabi3416g00005 399 FunFam Cyclin-dependent kinase D-1 5 94 - -
Gabi3416g00005 399 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Gabi3416g00005 399 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gabi3416g00005 399 PANTHER CELL DIVISION PROTEIN KINASE 13 300 - -
Gabi3416g00005 399 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3416g00005 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gabi3416g00005 399 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Gabi3416g00005 399 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00005 Gabi-Chr3416 38775 48583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00005 8 399 Core Cell Cycle Gene Families AT1G73690 71.465 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gabi3416g00005 Pkinase 2.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00005 K02202 - gmx:100776618 702.59