Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3416g00001 ATGGATATTGAGGAGGACATCCGTTCTTTACAGCTTGACTCAGCAGTAGAAGATAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATCTGATAAGATGGAAGAAATTGAGAAATCTGATACGATGGATGAAGGTCCGAAGCGGGAGGTTCAGGTACAGGCTGAGCCAAAAGTAAAAGATAAGGACATTCCTTCTGTGCAAGATGAAGAAGATGAGCTGAAGACGAAGAAAAGACACTTGAATGCTGTGTTTATTGGACATGTTGATGCTGGTAAGTCAACAACCGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGAACTATCCAAAAATACGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTTACCATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCGAACATGATCAGTGGCGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCACGGAAGGGCGAGTTTGAAACTGGATATGAGAAAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGTCCAAGCTGCTTGTTGTTGTCAATAAAATGGATGATCCTACAGTGAAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGAGTCCATTTCTAAAGCAATCAGGATACAATGTTAAGAAAGATGTCTTGTTTTTACCAATGTCTGGGCTGCTTGGTTCAAACATAAAAACAAGAGTGGATAAAAGCACTTGTTCATGGTGGGATGGTCCTTGCTTGTTTGAAGCCCTTGATGCTATTGAAGTTCCTCTGAGAGATCCCAATGGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTGATGGGTAAAGTGGAATCTGGTACTGTTTGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCTGTTTTTATTGATGAAGATCGGGTTAAACGTGCCGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTGTCCTGTCCAGTGTTGCAAATCCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTAGCGATTCTTGAATTGCTGGATAATGCTATTTTTACAGCTGGGTACAAGGCTGTTATGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTCGAGCTCTTACAGCAAATTGATCCAAAGACACGGAAACCCATGAAAAAGAAAGTTCTCTTTGTGAAGAGTGGCGCTGGTGTCATTTGCCGTGTTCAGGTCAATAACGCGATATGCATTGAGAAGTTCACTGATTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGTAAAGTCACTAGTCTGTGA 1530 0.417 MDIEEDIRSLQLDSAVEDNNGVVNPEDGKPEEVEKSDKMEEIEKSDTMDEGPKREVQVQAEPKVKDKDIPSVQDEEDELKTKKRHLNAVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVKWSKERYDEIESKMSPFLKQSGYNVKKDVLFLPMSGLLGSNIKTRVDKSTCSWWDGPCLFEALDAIEVPLRDPNGPFRMPIIDKFKDMGTVVMGKVESGTVCEGDSLLVMPNKDQVKVVAVFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVMHIHSVVEECEIVELLQQIDPKTRKPMKKKVLFVKSGAGVICRVQVNNAICIEKFTDFPQLGRFTLRTEGKTVAVGKVTSL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3416g00001 509 Gene3D Translation factors 312 397 - -
Gabi3416g00001 509 Gene3D - 64 307 IPR027417 -
Gabi3416g00001 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 63 307 - -
Gabi3416g00001 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 318 IPR027417 -
Gabi3416g00001 509 FunFam Putative translation elongation/initiation factor family protein 401 509 - -
Gabi3416g00001 509 MobiDBLite consensus disorder prediction 1 76 - -
Gabi3416g00001 509 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 309 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 CDD eRF3_C_III 401 509 - -
Gabi3416g00001 509 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Gabi3416g00001 509 MobiDBLite consensus disorder prediction 24 76 - -
Gabi3416g00001 509 Pfam Elongation factor Tu GTP binding domain 83 296 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 Pfam Elongation factor Tu C-terminal domain 400 508 IPR004160 -
Gabi3416g00001 509 CDD eRF3_II 314 395 - -
Gabi3416g00001 509 PANTHER TRANSLATION FACTOR 75 508 - -
Gabi3416g00001 509 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Gabi3416g00001 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 311 397 - -
Gabi3416g00001 509 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Gabi3416g00001 509 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 404 508 IPR009001 -
Gabi3416g00001 509 SUPERFAMILY Translation proteins 306 399 IPR009000 -
Gabi3416g00001 509 CDD EF1_alpha 87 307 - -
Gabi3416g00001 509 Gene3D Translation factors 402 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3416g00001 Gabi-Chr3416 10034 23264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3416g00001 83 509 Eukaryotic Initiation Factors Gene Family AT5G60390 37.674 8.48e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3416g00001 K03267 - gmx:100784412 906.746