Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3415g00002 ATGTCAAAGTCATTGTCATCGTCACCGTCCATTTTCGTAAAACCACACACTCGATACCAATTCCGATTCCAACACCAACACCACCTGAAACTGAATCCCACAAAACACGCTTCCTTAAGAATCCAAAACTCAACACAAACACTTGAATTCCTCAAACCTTACGTTATCTCACAGCACAAAACCATCCTGTGTGGTTGGTTATGCAGCGCCGTATCCGTTTACTCTCTCTCCAACATCCTCTCGAAATTCTCCGCAATCACAACCGCACCCATCGACGCTACTCAGAGTTTCGCGTTGGGGGGTTTGGTCATTTCACGCTTGGTCGCTAGCTACGCGCAGCACGCGCTTCTATGGGAAGCTGCACTCGACGCCGTTTACAAGCTTCGCCTTCACGTCTTCGACCGCGTCATGGAGAGAGAATTGGATTATTTCGAAGGCAAAAACGGTGTTTCAGCTGGCGACATTGCTTATCGAATCACCGCTGAAGCTTCTGACCTTGCCGTCACCTTATACACTCTTCTCAATACCATAGTACCCAGTACTCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTTATAAGTCCTGTCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGCATAGTGCTAGTTGTTGCCTTTCTTGGTCAACAGCTTCGTAAGATATCTAAAGAGTCACATCTTAGCGTTGCTGCACTCTCAGCATATCTTAATGAGATGCTGCCTGCAATTCTCTTTGTGAAAGCAAACAATGCTGAGTTGTGTGAGAGTGCCAGGTTCAAGAGACTGGCTCTGATGGACTATTCTGCTAAGCTGAACAAGAAAAAGATGAAAGCAGTGATTCCTCAGGTTATACAAGCTATTTATTTTGGAACCCTTTCCATACTTTGCGCTGGCTCCTTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTCGTGACATCATTGCTCTTCTTGATAGAGCCAATCCAGGATATAGGAAAAGCATACAATGAATGGAGGCAGGGAGAACCAGCTGCTGAACGTTTGCTGGCTATGACCAGGTTCAAAGATAAGGTGGTTGAGAAACCAGGTGCTGTTGATTTAGGCCATGTTACAGGGGATCTGAAATTCTGTGATGTCTCCTTTAAGTATAATGATGAAATGCCACATGTTTTAAATGGATTGAATCTCCACATTAGACCTGGAGAGATAGTTGCTCTGGTGGGTCCTTCTGGTGGAGGTAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTGCATACTGATTGATAACCATAACATCCAAAACATTCGGTTGCAAAGTTTGAGAAGACATGTTGGTCTTGTTTCTCAAGACATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTGAAGCATGTAGCTCAAACTGCTCTTGCAGATGAATTTATTAAAAAACTTCCACAAGGATACCAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGTTGGCTATTGCAAGGGCACTCTATCAAAATTCTTCAATATTAATTCTGGATGAGGCAACTTCTGCTTTAGATAGTAAATCTGAGTTAAAAGTGAGACAAGCTGTAGAGCGTTTGATGGAAAATCGCACAGTGCTTGTGATCAGCCATCGCTTGGAAACAGTTCTGATGGCTAAACGAATATTCCTTTTGGATAATGGGAAGCTAGAAGAGCTACCTAGATCAACAATGTTGGATGATCACAAGGATTCATTGCTAGCATCCGGGCTTGTTATTTGA 1839 0.4312 MSKSLSSSPSIFVKPHTRYQFRFQHQHHLKLNPTKHASLRIQNSTQTLEFLKPYVISQHKTILCGWLCSAVSVYSLSNILSKFSAITTAPIDATQSFALGGLVISRLVASYAQHALLWEAALDAVYKLRLHVFDRVMERELDYFEGKNGVSAGDIAYRITAEASDLAVTLYTLLNTIVPSTLQLSAMMMQMLVISPVLSLISAMVIPCIVLVVAFLGQQLRKISKESHLSVAALSAYLNEMLPAILFVKANNAELCESARFKRLALMDYSAKLNKKKMKAVIPQVIQAIYFGTLSILCAGSLVISRGSFDRCSLVSFVTSLLFLIEPIQDIGKAYNEWRQGEPAAERLLAMTRFKDKVVEKPGAVDLGHVTGDLKFCDVSFKYNDEMPHVLNGLNLHIRPGEIVALVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLQSLRRHVGLVSQDITLFSGTVAENIGYRDLTTKIDMERVKHVAQTALADEFIKKLPQGYQTNIGPRGSTLSGGQRQRLAIARALYQNSSILILDEATSALDSKSELKVRQAVERLMENRTVLVISHRLETVLMAKRIFLLDNGKLEELPRSTMLDDHKDSLLASGLVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3415g00002 612 CDD ABC_6TM_exporters 97 348 - -
Gabi3415g00002 612 Gene3D - 365 607 IPR027417 -
Gabi3415g00002 612 FunFam ABC transporter ATP-binding protein 367 608 - -
Gabi3415g00002 612 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 79 591 IPR039421 -
Gabi3415g00002 612 FunFam ABC transporter related 49 354 - -
Gabi3415g00002 612 Pfam ABC transporter 391 542 IPR003439 GO:0005524
Gabi3415g00002 612 Pfam ABC transporter transmembrane region 69 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3415g00002 612 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524|GO:0016887
Gabi3415g00002 612 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 611 IPR003439 GO:0005524
Gabi3415g00002 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 593 IPR027417 -
Gabi3415g00002 612 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 67 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3415g00002 612 Gene3D ABC transporter type 1, transmembrane domain 48 353 IPR036640 GO:0005524|GO:0016020
Gabi3415g00002 612 SMART AAA_5 400 588 IPR003593 GO:0016887
Gabi3415g00002 612 SUPERFAMILY ABC transporter transmembrane region 49 352 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3415g00002 Gabi-Chr3415 24242 29379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3415g00002 61 607 Calmodulin-binding Proteins AT2G36910 28.850 1.01e-50 187