Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3414g00027 ATGTCATCTTCCTCACATGAAGTTATCCTCACTAGCTCCGCTGATGGCCCCATCATGGCCTATGAGGCTTCCACCGGCGCCACCATTGCCCATTTCACCGGTAGCCGGTCACCGTGCCGTGGCCTCACCATGGCAGGCCAGGGATTCATTGCAGCCTCCCATGTGTTCTCAGACACAGGTTTAGGCTCAATTCACATCTACAACTGGTACACTTCAACTGTGTTCAACAATTTCCCTGTCCCTGAACCTGTTGCTCCACTCATTGCTACCTCTGATGGTGACTTTCTCTTTGCTGGTGGGGTATCAGGGACCATTCATTCTCTCTCACTTCATTCTGGGGATCTGATCAAATCATTTTCTGCTCACTCAAAACCTATATCTACTCTCCAACTCAGTGATGATGGGTCACTAGTCATTTCAGGCAGTGATGATGGGACAATTGTTGTGATGCCAACCTTTAGGCTTGTTGAGTCCTCCACCTCCTCAGTTGAAGAGGACCCAAAAGAATTGATCTTGTACAAGTGGAAGGCACATTTTGATTCAGTGACTGCTTTCAACTCTAGAATAGGGCTGTGCAGCTCTTCATTGGTTTCTTGCTCACTAGATTGCACATGTAAGTTTTGGTGTCTATCAAGTGGAATTATCATACAAACTGTGACATTCCCTTGTGCCATTTTTGGGATTGCCATGGATTCAACAGAGTCAGGATTCTATGCTGCTGGTGCAGATGGGTTGGTTTATAATGTAACAATGAAGGTTGGGAGCAGAAAAGTGGTTGGCAAATCCTATGAGTTGATGACTTGGCCTCAGAGCCATGGTGGGGCAATTGTATCTTTGGTTTTGGTGAATGAAGGGAAGAATTTGGTGTCAGCTGGAGAAGATGGGAGTGTTTGGATGTGGGATGTTGAGAATGGAGAAGTTACTATGGTTATGGGTAATAATGACATGGGAATTAGTATCAGTGATATGATAGTGGCAAGAGGTACTAATGTGTATGGAGTTAGAAAGCACAATGCAGCTGGTGAAGCCAGTGACTTCAATTCTTTAGGGATATATGATGAAGAGATGATTAAGACTATGAAGCAAATCACGGAGCTTGGGAACGTGACAAATGTGGTAGCTCAAGACAAGACAAAAGCCATTGACATGCTAGGATCTGCAATTGCAATGTATGAGAGGCTCTTGAAGCTTATCCTTAAGGAAGCTACCAAAGCCATTGAAGAGGCGGAAGAGGAAGAGAAAGAAGATGAGAAGGAAGACAAGTAA 1266 0.4479 MSSSSHEVILTSSADGPIMAYEASTGATIAHFTGSRSPCRGLTMAGQGFIAASHVFSDTGLGSIHIYNWYTSTVFNNFPVPEPVAPLIATSDGDFLFAGGVSGTIHSLSLHSGDLIKSFSAHSKPISTLQLSDDGSLVISGSDDGTIVVMPTFRLVESSTSSVEEDPKELILYKWKAHFDSVTAFNSRIGLCSSSLVSCSLDCTCKFWCLSSGIIIQTVTFPCAIFGIAMDSTESGFYAAGADGLVYNVTMKVGSRKVVGKSYELMTWPQSHGGAIVSLVLVNEGKNLVSAGEDGSVWMWDVENGEVTMVMGNNDMGISISDMIVARGTNVYGVRKHNAAGEASDFNSLGIYDEEMIKTMKQITELGNVTNVVAQDKTKAIDMLGSAIAMYERLLKLILKEATKAIEEAEEEEKEDEKEDK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3414g00027 421 Gene3D - 1 155 IPR015943 GO:0005515
Gabi3414g00027 421 SMART ire1_9 89 120 IPR018391 -
Gabi3414g00027 421 SMART ire1_9 2 33 IPR018391 -
Gabi3414g00027 421 SMART ire1_9 279 312 IPR018391 -
Gabi3414g00027 421 Gene3D - 156 315 IPR015943 GO:0005515
Gabi3414g00027 421 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Gabi3414g00027 421 Coils Coil 392 420 - -
Gabi3414g00027 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Gabi3414g00027 421 PANTHER WD-REPEAT PROTEIN 18 6 332 IPR045227 -
Gabi3414g00027 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Gabi3414g00027 421 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 306 IPR011047 -
Gabi3414g00027 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 149 - -
Gabi3414g00027 421 SMART WD40_4 261 301 IPR001680 GO:0005515
Gabi3414g00027 421 SMART WD40_4 112 151 IPR001680 GO:0005515
Gabi3414g00027 421 SMART WD40_4 168 209 IPR001680 GO:0005515
Gabi3414g00027 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 306 - -
Gabi3414g00027 421 Pfam WD domain, G-beta repeat 173 208 IPR001680 GO:0005515
Gabi3414g00027 421 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3414g00027 73 304 U-box Gene Family AT1G04510 24.898 1.07e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3414g00027 K14829 - gmx:100785191 502.286