Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3414g00020 ATGGAGGGTCATGATCAGATGGATCTTATTGGAGAAAATTTTGAGAATGGTTTGATGGGGAGGATGAGGGATGATGAGAATGACAGCAGGTCTGGAAGTGATAATTTTGAAGGTGGATCTGGTGATGATCAAGATGCTGGTGATAACACCCCACAGAGGAAGAAAAAATATCATAGACACACTCCTCAACAAATTCAGCAGCTTGAATCTTTCTTCAAGGATTGTCCTCATCCTGATGAGAAGCAAAGATCAGATCTTGGTAAGAAGCTTGGTTTGGAGAATAAGCAAATCAAGTTCTGGTTCCAGAATCGGCGAACCCAAATGAAGGCACAACTGGAACGCCATGAGAACATGATTCTTAAGCAGGAAAATGACAAGCTCCGAGCTGAGAACACCATGATGAGGGAAGCTATTGAAAATCCAATATGTAACAACTGTGGTGGACATGCCATTCCTGGCCAAATTTCAATGGAGGAGCACCAGATGAGAATTGAAAATGCTCGACTGCAGGATGAACTTAACAGAGTCTCTGCCTTAACAAACAAGTTCTTTGGCGGGCCGGTCTCACGGTTGGCCAGTCCCATTGCTATGCCAACCCCAAATTCTGGTCTCAACCTCTCTATTGGAAGGAATGCAATTGGTGGTTCAAGCAACTTTGCCATGCCCTTGCCAATGGGACTTGATTTGGGAGAAGGAGTTTTGGGCAATCCACCACCACCTCCTCTTCCAATGTCTGGGATTCGACCACCAATGGGAAACGGAGTCCAGATTGATCCATCTATGCTTGCTAATCTTGCAGCATCTGCTATGGATGAATTAATTGGGATGGCTCAGATAGATAACTCTCTTTGGATTAAGAGTTCAGATGGAGGGAAGGAAGTACTGAACCATGAGGAGTATGCGAGGATGTCTTCTATCTATAATGGTACTAAACCCATTGGTTATGCAACTGAAGCTACAAGAGAAACTGGGGTAGTACTAATTAACAGTTTGGCCCTTGTGGACTCATTGATGGATGTGGATCTTTGGTCGGAGATGTTTCCATCTATGATTGCCAGAGCTGTCACCCTGGGAGTAATTTTTAGTGTGGCTGGAACCAGGAATGGTACTTTGCAACTGATGAATGCTGAGCTTCAATTGGTTTCTCCACTGGTACCTGTTCGTCAAGTGAATTTCCTCAGGTATTGCAAGCAGCATGCAGTAGGTATATGGGTTGTGGTTGATCTTTCGGTTGACATTGGTCGCAATGCTACCAATTCATACCCAATCATGAGCTGTAGGAAGCTTCCTTCGGGCTGTATTGTGCAGGATATGTCCAATGGTTTAACCAAGATTACATGGATTGATCATTCCCAGTATGATGAGAGTGTTATCCCCCAACTCTATCGCCCATTGGTTAGTTCAGGCATTGGATTTGGTGCTCAGAGATGGATTGCCACTCTCCAAAGGCAGTGTCAATGCTTGGCAATCCTCTCTTCCCCTTCCATCCGAGCTGAGAACACTAAAGCCCTAGTAGGCCAACCCGGCATGAAAAGCTTACTGAAGCTCACGCAACGCATGACAGAATGCTTCTGTTCTGGGATTTGTTCTTCGTCTATACGCAAGTGGGAGATCATTCCTCTTGCAACAATTGCTGATGACATGAAACTGATGACCCGGAAAAATGTGGATGATCCAGGTGAGGCTCTCGGCATTATGCTGAGTGTTGCAACTTCTGTTTGGATGCCGGTGTCGAGGCAAAGGCTGTTTGACTTCCTGCGTGATGCACGGATGAGAAGGCATTGGGACGACTCGGCCAGTGATGTTACAGTGAACGAGATTCACAGTATTGTTAAAGCGCAAGGACAAGGAAATTGCATTTCTATACTTCGCGCTAATGTAAGTCATGCTAATGACTACGGGAACAGCATATATGTGCAAGAATCATGGACTGATGCCACCGGCTCGATGATAGTGTATAGCCCGATAAATGCGCAGGCGTTGAAAGTGGTGGTTAGTGGTGGAGATTCTGCATGTGTAAGACTCTTGCCTTCGGGCTTTACGATTCTTCCAGATGGTAATTCAAACAGCGGCAACGGTGACGGTAGTGGCGGCGGTGGATGTTTGTTAACAGTGGGGAGACAAATCATGGTGAATAATCTCCCACAAGCTAAGTTCACAGTGGAGTCAGTTACTAGACTTAATGACACCGTCTCGGGCACCATACAGAAGATCAAAGCTGCACTTGGAGTTGCATGA 2238 0.4567 MEGHDQMDLIGENFENGLMGRMRDDENDSRSGSDNFEGGSGDDQDAGDNTPQRKKKYHRHTPQQIQQLESFFKDCPHPDEKQRSDLGKKLGLENKQIKFWFQNRRTQMKAQLERHENMILKQENDKLRAENTMMREAIENPICNNCGGHAIPGQISMEEHQMRIENARLQDELNRVSALTNKFFGGPVSRLASPIAMPTPNSGLNLSIGRNAIGGSSNFAMPLPMGLDLGEGVLGNPPPPPLPMSGIRPPMGNGVQIDPSMLANLAASAMDELIGMAQIDNSLWIKSSDGGKEVLNHEEYARMSSIYNGTKPIGYATEATRETGVVLINSLALVDSLMDVDLWSEMFPSMIARAVTLGVIFSVAGTRNGTLQLMNAELQLVSPLVPVRQVNFLRYCKQHAVGIWVVVDLSVDIGRNATNSYPIMSCRKLPSGCIVQDMSNGLTKITWIDHSQYDESVIPQLYRPLVSSGIGFGAQRWIATLQRQCQCLAILSSPSIRAENTKALVGQPGMKSLLKLTQRMTECFCSGICSSSIRKWEIIPLATIADDMKLMTRKNVDDPGEALGIMLSVATSVWMPVSRQRLFDFLRDARMRRHWDDSASDVTVNEIHSIVKAQGQGNCISILRANVSHANDYGNSIYVQESWTDATGSMIVYSPINAQALKVVVSGGDSACVRLLPSGFTILPDGNSNSGNGDGSGGGGCLLTVGRQIMVNNLPQAKFTVESVTRLNDTVSGTIQKIKAALGVA 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3414g00020 745 CDD homeodomain 54 111 IPR001356 GO:0003677
Gabi3414g00020 745 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Gabi3414g00020 745 Coils Coil 105 140 - -
Gabi3414g00020 745 SMART HOX_1 53 115 IPR001356 GO:0003677
Gabi3414g00020 745 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Gabi3414g00020 745 SUPERFAMILY Bet v1-like 256 487 - -
Gabi3414g00020 745 MobiDBLite consensus disorder prediction 18 32 - -
Gabi3414g00020 745 FunFam Homeobox-leucine zipper protein HDG1 40 127 - -
Gabi3414g00020 745 ProSiteProfiles START domain profile. 255 490 IPR002913 GO:0008289
Gabi3414g00020 745 MobiDBLite consensus disorder prediction 1 63 - -
Gabi3414g00020 745 SMART START_1 264 487 IPR002913 GO:0008289
Gabi3414g00020 745 CDD START_ArGLABRA2_like 259 486 - -
Gabi3414g00020 745 Gene3D - 41 127 - -
Gabi3414g00020 745 Pfam START domain 265 487 IPR002913 GO:0008289
Gabi3414g00020 745 SUPERFAMILY Homeodomain-like 39 110 IPR009057 -
Gabi3414g00020 745 SUPERFAMILY Bet v1-like 522 723 - -
Gabi3414g00020 745 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 742 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3414g00020 Gabi-Chr3414 255941 259656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3414g00020 1 742 Homeobox Transcription Factor Family AT3G61150 48.964 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3414g00020 START 2.1e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3414g00020 K09338 - gmx:100794400 989.178