Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3412g00003 ATGGGTCAACCATTACCAACATCATTATTTTCATTTTTATTATTAACACTTCATCTATCATTACAAGGGGTCATTTCAACAACATTCACTCTAGTTAACCAATGTAACTACACTGTGTGGCCAGCATCAACCGGTAGAAACTTAACCATAGCAGCCACAGGCTTCGTTTTGAAAACTGGTGAATCTTTCAATGTCACCGTACCCACTTCATGGAGCGGCCGTTTCTGGGGTCGAACTCTCTGCACCACTGACTCAACCGGAAAATTCTCCTGCCTCACCGGCGATTGCGGCTCCGGCAAGGTCACGTGCGACGGCAACAGGGGAGGCTCGCCGCCTGCCACGCTGGCCGAGTTTACGGTAAACAGCCCCGGTGGCCTTGATTTCTTTGACGTAAGCTTGGTAGACGGTTACAACGTACCCATGCTGTTGGTTCCACACGGTGGTTCTAACGGCAGCTGCAACAGCACGGGTTGTCCGGCGGATCTGAACGCCGTGTGTCCGACGGAGCTCAAGGTCACTGGCGGGGAGGAGAAGAAGCAAGTTGTGGCATGTCAGGGTCCTTGTGCTGCGTTCAATTTGCAGTATTTTTGTTGTGCTGGGAATCGTAATAGTCGAGATACATGCGAGCCAAGTGTTTATTCTCAGATATTCAAAACGGCATGCCCACAGGCTTATAGTTATCCTTATGATGATGATAGGACAAGCATGTTTACTTGTTCATCTTCTGCAGATTATAATATCATCTTTTGTCCCTCTACTAACACCAGCCTCAGATTGCTGGATCAAGGTGTAAGTGTTGGTGCCTCACTTACTGCTGGCAATGGGACAACTCGGTGGCTTTCTCCTTCAGGCGAATTTGCGTTTGGATTTCACCAACTTCCTAATAATGAGCTTTTCCTGCTGGCTATATGGTATGACAAAATACCCGACAAGACCATTATTTGGTATGCAAATGGTGACAACCCTGCTCCTATAGGATCAAGGTTGGAACTAAATGACTCTCGTGGACTAGTGCTAAGTAGCCCTCAAGGTACAGAGCTATGGAGATCAGATTTCACATCAGGTACAATTTCCAGTGGTCTAATGAATGATACTGGGAATTTTCTGCTTCAGGACAAAAAATTTGTGACATTATGGGACAGTTTTAGTCATCCTTCTGACACATTGATGCCTAGTCAAGAAATGGAGTTAAATGGAAATCTTTCTTCACGGCAAGGGGAGTTCAATTTCTCACGTGGAAGGTTCAAACTTCATCTACAAGAAGATGGGAATCTTGTGCTCAACCTTATGAATTTGCCGAGTAACTATAGTTACGAGCCTTACTACAACACTGGCACTGCTGATGCTAAGAATAGTACAAATGTTGGCTTGCGTTTGATATTTGACAAATCAGGTTTGTTATACATACTGAAAAAAAGTGGGGAGATGTTTAGTATCTTCAAGCCAAATGAGAGTGTCTCAACTGATAGCTTTTACTACAGAGCAATGATCAATTATGATGGTGTTGTCACCGTAGCATATTACCCCAAAGATCCAAAAAATGGACAAAGCTGGGTCATTGCACAGACTATACCAGAAAACATTTGTAATTCTACATTCACAGATGGTGAAGGTGTTTGCGGGTTTAATAGCATCTGCATCCTCAAAGATGACCAAAGGCCAAACTGTACTTGCCCAGAAGGATACTCTCTAATTGATTCAAATAACATGTATGGTGGATGCATACCAAATTTCCAAGTTATTTGTCAAGCAGGTGGGTATAGGGGTTCACAGGATGATCTATACATAATGAAGGACTTACCAAACACTGATTGGCCTAAATCTGATTATGAAATACTTAGTCCTTCTAGTCTACAAGAATGCACAAAATCTTGTTTGCAAGATTGCTTATGTGTGTTGGTTACTTTTAGTGGAAGTTCTTGCCGGAAGAAGAAGCTCCCACTTTCGTTTGGGAGAAAAGATCAGGGAGTAAACGGAACTTCTGTCATGAAATTGATGAAAAATGATGATACTCTCGCCCCTTTCCCAAACCCAAATGGGAAGAAAGATCATGATACTTTGATCATTGTGATATCAGTTCTATTGGGAAGCTCTGTGTTTGTCATTTTAACATTGGTTGGTGCAATATGTTTCGGTTTCTCCTACGACCGCAAGAAGATCAAAAGTAGTAGAACCAACAATACTGTTGTTGACAGGAATTTGCGCAATTTTACCTTCAAGGAACTTGCAGAAGCAACAAGCAACTTCGGAGAAGAACTGGGAAGGGGATCCTTTAGCATTGTCTACAAAGGAACAATAGATATGACTGGTGTGGCTGTTAAGAAATTAGACAAGTTGTTGAAAGACAACGATAAGGAATTTCAGACTGAAGTGAATGTGATAGGCCAAACCCATCATAGGAACCTAGTTCGTCTGCTTGGATATTGCAATGAGGAAGAACACCGGATTCTGGTTTATGAGTTGATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACTAATTTGAAACCAAATTGGAACCAAAGAGTAGACATTGCCCTTGGGGTTGCAAGAGGGCTTGTTTACTTGCATGAGGAATGTTGCACCCAGATCATCCATTGTGACATAAAGCCACAAAATGTACTTCTAGATGATCAGTACAATGCCAGAATTTCAGATTTTGGGTTAGCAAAGCTATTGTTGATTAATCAAAGCCACACTGAAACCGGAATTAGAGGAACAAAAGGGTATGTTGCACCAGATTGGTTCAGGAGTGGACCTATCACTGCTAAGGTTGATACTTATAGTTTTGGTGTGCTATTACTAGAGATCATTTGCTGTAGGAAAAATGTAGAAAAGGAGTTTGTTAGTGAAGAAAAGGGGATTTTAACTGATTGGGCATATGATTGCTACAGGACTAAAAGTCTAAACATTCTTCTAGAAAACGATTGTGATGCTGTCAATGACATGAAGATTTTGGACAGGTTTGTCATGATTGCTATTTGGTGCATTCAAGAAGATCCCTCTCTTAGGCCAACAATGAAGAAGGTTTTGCTGATGCTAGAAGGAATTGTTGAAGTTGCAATTCCCCCAAGTCCCTACCTTTATGGTTCTGTTAGTTGCAATTGA 3108 0.4196 MGQPLPTSLFSFLLLTLHLSLQGVISTTFTLVNQCNYTVWPASTGRNLTIAATGFVLKTGESFNVTVPTSWSGRFWGRTLCTTDSTGKFSCLTGDCGSGKVTCDGNRGGSPPATLAEFTVNSPGGLDFFDVSLVDGYNVPMLLVPHGGSNGSCNSTGCPADLNAVCPTELKVTGGEEKKQVVACQGPCAAFNLQYFCCAGNRNSRDTCEPSVYSQIFKTACPQAYSYPYDDDRTSMFTCSSSADYNIIFCPSTNTSLRLLDQGVSVGASLTAGNGTTRWLSPSGEFAFGFHQLPNNELFLLAIWYDKIPDKTIIWYANGDNPAPIGSRLELNDSRGLVLSSPQGTELWRSDFTSGTISSGLMNDTGNFLLQDKKFVTLWDSFSHPSDTLMPSQEMELNGNLSSRQGEFNFSRGRFKLHLQEDGNLVLNLMNLPSNYSYEPYYNTGTADAKNSTNVGLRLIFDKSGLLYILKKSGEMFSIFKPNESVSTDSFYYRAMINYDGVVTVAYYPKDPKNGQSWVIAQTIPENICNSTFTDGEGVCGFNSICILKDDQRPNCTCPEGYSLIDSNNMYGGCIPNFQVICQAGGYRGSQDDLYIMKDLPNTDWPKSDYEILSPSSLQECTKSCLQDCLCVLVTFSGSSCRKKKLPLSFGRKDQGVNGTSVMKLMKNDDTLAPFPNPNGKKDHDTLIIVISVLLGSSVFVILTLVGAICFGFSYDRKKIKSSRTNNTVVDRNLRNFTFKELAEATSNFGEELGRGSFSIVYKGTIDMTGVAVKKLDKLLKDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEEEHRILVYELMSNGTLASFLFTNLKPNWNQRVDIALGVARGLVYLHEECCTQIIHCDIKPQNVLLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSGPITAKVDTYSFGVLLLEIICCRKNVEKEFVSEEKGILTDWAYDCYRTKSLNILLENDCDAVNDMKILDRFVMIAIWCIQEDPSLRPTMKKVLLMLEGIVEVAIPPSPYLYGSVSCN 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3412g00003 1035 ProSitePatterns Protein kinases ATP-binding region signature. 753 775 IPR017441 GO:0005524
Gabi3412g00003 1035 Gene3D Thaumatin 27 251 IPR037176 -
Gabi3412g00003 1035 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Gabi3412g00003 1035 Pfam Thaumatin family 33 251 IPR001938 -
Gabi3412g00003 1035 Gene3D - 385 511 IPR036426 -
Gabi3412g00003 1035 SUPERFAMILY alpha-D-mannose-specific plant lectins 299 446 IPR036426 -
Gabi3412g00003 1035 ProSiteProfiles Bulb-type lectin domain profile. 255 383 IPR001480 -
Gabi3412g00003 1035 SUPERFAMILY Osmotin, thaumatin-like protein 27 252 IPR037176 -
Gabi3412g00003 1035 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Gabi3412g00003 1035 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gabi3412g00003 1035 PRINTS Pathogenesis-related protein signature 241 250 IPR001938 -
Gabi3412g00003 1035 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Gabi3412g00003 1035 PRINTS Pathogenesis-related protein signature 53 62 IPR001938 -
Gabi3412g00003 1035 SMART blect_4 261 385 IPR001480 -
Gabi3412g00003 1035 Pfam Protein kinase domain 750 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3412g00003 1035 FunFam Thaumatin-like protein 1a 27 251 - -
Gabi3412g00003 1035 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 822 1022 - -
Gabi3412g00003 1035 ProSiteProfiles Thaumatin family profile. 26 251 IPR001938 -
Gabi3412g00003 1035 SMART serkin_6 747 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3412g00003 1035 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 259 383 - -
Gabi3412g00003 1035 SUPERFAMILY Protein kinase-like (PK-like) 729 1015 IPR011009 -
Gabi3412g00003 1035 FunFam S-receptor-like serine/threonine-protein kinase 716 821 - -
Gabi3412g00003 1035 CDD B_lectin 264 385 IPR001480 -
Gabi3412g00003 1035 ProSiteProfiles Protein kinase domain profile. 747 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3412g00003 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 864 876 IPR008271 GO:0004672|GO:0006468
Gabi3412g00003 1035 CDD TLP-PA 28 250 - -
Gabi3412g00003 1035 Pfam D-mannose binding lectin 312 400 IPR001480 -
Gabi3412g00003 1035 SMART tha2 29 251 IPR001938 -
Gabi3412g00003 1035 Gene3D Transferase(Phosphotransferase) domain 1 822 1022 - -
Gabi3412g00003 1035 Gene3D Phosphorylase Kinase; domain 1 711 821 - -
Gabi3412g00003 1035 Gene3D - 261 384 IPR036426 -
Gabi3412g00003 1035 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 270 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3412g00003 Gabi-Chr3412 39867 43986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3412g00003 674 1019 Receptor kinase-like Gene Family AT5G45780 39.665 1.67e-72 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi3412g00003 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3412g00003 - - mtr:25487002 1586.62