Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3411g00002 ATGCCGTCGGAACCAATACCGTGGGATCGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCTGAGTCTCTAGGGTCTGTGGCCAGATGGAGAGACACTCCAGCTCATCACGGCTCCCGCGAGTTGAATCGGTGGGGATCAGCCGAAAATCGGCGCTCATCTGGTCATGGCAAGCTGGGTGGTTGGCACCTGTTTCCAGAAGATTCCGGTAATGGGCATGGGCTTTCTCGGTCCTGTGATAAGATGCTGGAGGAAAATAATTGTCGGCCTTCAGTTTCTCGAGGGGATGGAAAGTATGGCAGGAACAATAGGGAAAACAGAGGATCCTTTAGCCAGAGAGATTGGAGAGGACATTCATCGGAAACTGCTAACAGCTCTCTGAATTTGTCCAGGAGGCAACTGGATGCGAATAATGACCAGAGATCAGTTGATGACATACTCACATATTCTTCTCATCCGCATTCCGACTTTGTGAACTCTTGGGAGCAGCATCACTTGAAAGACCAGCATGAAAAGATGGGTGGTGCCAATGGTTTGGGTACGGGCCAGAGATCTGACAGGGAGAGTTTGGGTTCGATTGCATGGAAGCCACTTAAATGGAACCGTTCTGGAAGCTTGTCTTCTCTAGGCTCAGGCTTTAGCCACTCAAGTAGGAGCGCCAGAGGGGCAGATTCCTGTGAAGGGAAGGTTGAGTTGAAGGACAAAAATGCAACTGCTGTTGAGTCAAATTCTGGGGAAGCTTCTGCGTATGAGACTTCTTCTGCTCCTCTGGCTAAATTGGGGAAGAAGCCTAGGCTAAATTGGGGTGAGGGACTTGCAAAGTATGAGAAAAAGAAAGTCGAGGGGCCTGATGTAAGTGCAAACAAAGATGGCGCTGTCTTCTCTACTATCAACAATTTCCCCAGTCCCATCTTAGTAGATAAAAGCCCGAAAGATACAGGATTTTCAGATTCTGCATCTCCTGCAACTCCATCTTCTGTTGCCTGCAGTTCCTTGCAAGCAGGTGTGGATGATAAATTATTTGGAAAAGCTTCAAATGTGGACAATGATGCTAGTAATTTGAGTGGTTCACCTCGTCCTGTGTCTCAAAATCATATGCAGAGGTTTCCTTTCAATTTAGAGAAGGTGGATATTGACTCGTTGACAAGTCTGGGTTCTTCACTTTTTGAGTTGCTACAGTCTGATGATTTGAGCTCTGTGGATTATAGTCTAGTGATATCCCCTGCAATGAATAAGTTGCTGGCATGGAAAGCTGACATTTCAAAGGTATTGGAGGTGACTGAAACTGAAATTGATTTACTTGAAAATGAACTGAAGTCACTAAAATCTGAATCTGGGGATAGATTTCCGTACTCAGCAGCAGTTGGGTCCCTGCTGGTATACTTCAATGAAAAATCTTGTGATGAACATGTTGGAGGCTCTGTCAAGGTTGCTCGTCCAGAGTCATTGCAAATTGTTTCTTCTGATGACCCTAATGTGGAGATGCTTCATTCTACTAACTTGCATGATATACATGATAATGGCAAGGAAGATGATATTGACAGTCCTGGAACGGCAACGTCTAAATTTGTAGAGCCTCTGCCCTTGATTAATGCAGTTTCTTCATGTGATGTGGGGAGATATAATACTTGCTCTGGAGCCTTGGATGGAATTCAGTCTACTGCCATGAAATGCTTACTTCCCTGTGCGTATAGACAAGTTGCTACTGTATCTGCTTGTGGTGATGGTAATACATCTATGGAGGTAAAAGATGGCGTGGGTGGTAACTCTGGCGCAAGCTTTTGTTCTAGCACTGAGGATATTTTATGTGCTAAAATTATTTCTGCCAATAAAGAATATGCAAAGAGTGCATCTGAGGTATTTACTAAGTTATTGCCAAAAGAATGTGATAAGATGGCTAATATTGGAGCTAGCTGCAGCTCATGCTCACATGATAGTGCATTCATTGTGGAAAAATTTGCAAAGAAAAAGCTGTTTGCAAGATTTAAGGAGAGAGTTATAACACTTAAGTTTAAAGCCTTGCATTACCTGTGGAAAGAAGATATGCGCTTACTATCTATAAGGAAATGCCGCCCAAAATCTCACAAAAAACTTGAAATAGGTTTGCGAACTATCAGTTGTGTTCGTCAAAAGAATCGATCCTCCATTCGTTCTCGTTTTCCCTTCTCAGAAGGAAATCAACTAAGCTTGGTTCCAACATCTGAGATGATTAATTATACAAGGCAACTGCTTTCAGAATCCCAAGATAAAGTTCACAGAAACTGCTTGAAGATGCCAGCACTAATTTTGGATCAGAAGGAGAAAATGATTTCAAAGTTTATATCTAGCAATGGGCTGGTTGAAGATCCTTTGGCTATTGAGAGAGAAAGGGCTATGATCAACCCATGGACTTCAGAAGAGAGAGATATTTTCATGGAGAAATTTGCAGCCTTTGGAAAGGATTTTCGGAGAATTGCTTCTTTCCTTGACCACAAAACAACTGCTGATTGTGTTGAATTCTACTACAAAAACCACAAGTCCGATTGTTTTGAGAAAATTAAGGTGCAAGATGGTGGTGTTAAGCTAGGGAAGTTGTTTACTGCCAAAACTGACTTGATGGCATCAGGTAAAAAATGGAATTATCAAGTGAATGCTGCTTCTCTTGAGATTTTGAGTGCAGCTTCAGTGATGGCAGATGGCATTGCGGGTAACCAAAACATGCATTCAGGAAGTTCACTTTTAAGGGGATATGGTTGTTTGAAAACATCAAGGGATGAGGATAGCATCACGAAGAGATCAAGTGGTTTTGACATTCTTCAAGAGGAAAGGGAGACTGTCGCAGCTGATGTATTGGCTGGTATATGTGGTTCTCTTTCATCTAAGGCTATGAGTTCGTGCAGAACAAGTTCATTTCATAACACGAACAGGAAGCGTTTGAAGTTGAGGCCTCTATGCAAACAACCTATGACGCCTGATGTTACTCAAAATATTGATGATGAAACTTGTTCTGATGAGGGCTGTGGTGAAATGGATCCTTCTAATTGGACAGACGAGGAGAAGGCAACCTTTCTTCAGGCTGTATCATCATTTGGAAAGGATTTTGCGATGATTGCACAAAGTGTAGGAACAAGGTCCCAAGATCAGTGCAAAGCTTTTTTCAGTAAGGCTCGGAAATGCCTTGGCTTGGACCTCATGCACCCTAGACCTGAAAATGTTGGATCACCAGTGAATAATGATACAAGTGGTGGCAGGAGTGACACAGAGGATGCATGCATTGTGGAGATAGGTTCAGTCATTGGCACTGATAAGTCAGGCACTAAAACAGATGAGGAACTCCCTTCGCCTGGCATGAACACATACTGTGATGAATCCAATCCTGTGGAAGCCAGGAACTTGTCAGCTGACTTAAATGAATCAAAGGAGATATATGGGGAAGAAGTAGATCGTGAAGTTGTAAATATGGTTTCCGATGCATGTGTAATTAAGTGCGAGTCTAAACTGGGCTCTGATGATAGCGGGGTTGTGTTGTACAGTTCTGATAAGTCTGGTTTTGTTGGGGACCAGGGAGCTATAATTATGTCAGATAACTTACAAGCTGGAAAAGATAAACCAAATGAAGTGGGAGGTGCCGTTACAGAATTGTTGTCTGCTTCAGAATTAATTGAACCGTGCCACTCTAATCCTGTTGCTGAGGTTTTTACTGGTGGTTCTGGAAACAAATTGGAGGGGTCAACTCCATGCGTTGATGGTAGAGATGATAAACATGAAGCTGATACAGATGTTGGAGTTGAATTGAAAAACTCAGTCCATGATTCAAGATTGAGTTTTGGTGCTAAAAATCAGCTGCAACTGTCCCATAAGTCTTATTTCTTAGGATCCTCTGTAGATGATCCTCATGCAACTGCAAATTCAATGTTGCAAAATACTGCCGGTGCTTCTGTTCAATGTGTGAAAAAAACTATCCTAGATCGAGTGTCTTCTACTTGTGATTTTCCGGGAAGTAGAGATAAGAATAGTCATAATTCCATCAGCGATGGAGGCTATCAGCTTCTTAAGCATGGGAATTTATTGGACCATGTTGAGGCTGCTAGAATCCTTCAGTGCTATCCTTTCCAAGTGCCTGTTAAGAAAGAAGTGAATGGAGATATGAGCTGCAGCAATTCAGCAACTGTGTTCCCTATTCTGTCACAAAAGATTGAACAAGCTGATGGTAATTACAAAACACAGTTGCGGTGTTCGTCAGATTCAGAAAAAACTTCCAGAAATGGTGATGTGAAACTGTTTGGGAAGATATTATCCAATCCTTCGTCCACCCAGAAGCCTAATTTAACTGCCAAGAGAAATGAAGAAAATGGTACCCATCATCTGAAGTTAAGCCGCAACTCTTCTAATATGAAATTTGCTGGCCATTATAATGCTGACAAAAAATCAGCTATTTTGAAGTTTGATCATAATGATTATAGGGGCCTTGAAAATGTTCCTTTGAGTTATGGTTATCGGGATGGGAACAGAATACCGACTAGTTTCTCATCACTACCTGATTCTGCCCTCTTCCTTGCCAAATATCCTGCAGCATTCAGTAATTATCCTACATCTTCTGCCAAATTAGAGCAACATTCATTGCAGGCATTGGCCAAAAATAATGAACAGCACCTGAATGGAGTATCTGCTTTTACAACTAGAGAAGTCAATGGCAGCAATGGTGTGATTGATTATCAGATGTTTAGAAATAGGGATGGTCTGAAAGTGCAGCCATTTATGGTAGATGTAAAGCATCGACAAGATATGTTCTCTGAGATACAGAGAAGAAATTTTGAAGCTATCTCAAGTTTACAGGGAATGGTGGGAATGAATGGTGTTGGGAGACCAGGTATTGTTGTTGGAGGATCACGGAGTGGAGTCTCAGATCCTGTGGCAGCCATCAAAATGCATTATTCAAATTCTGATCAGTGTGGCAGTCAGAATGGGAGTATAATGAGAGAGGATGAATCTTGGGGTGGAAAAGGGGATTTAGGCAGGTAG 5004 0.4225 MPSEPIPWDRKDFFKERKHERSESLGSVARWRDTPAHHGSRELNRWGSAENRRSSGHGKLGGWHLFPEDSGNGHGLSRSCDKMLEENNCRPSVSRGDGKYGRNNRENRGSFSQRDWRGHSSETANSSLNLSRRQLDANNDQRSVDDILTYSSHPHSDFVNSWEQHHLKDQHEKMGGANGLGTGQRSDRESLGSIAWKPLKWNRSGSLSSLGSGFSHSSRSARGADSCEGKVELKDKNATAVESNSGEASAYETSSAPLAKLGKKPRLNWGEGLAKYEKKKVEGPDVSANKDGAVFSTINNFPSPILVDKSPKDTGFSDSASPATPSSVACSSLQAGVDDKLFGKASNVDNDASNLSGSPRPVSQNHMQRFPFNLEKVDIDSLTSLGSSLFELLQSDDLSSVDYSLVISPAMNKLLAWKADISKVLEVTETEIDLLENELKSLKSESGDRFPYSAAVGSLLVYFNEKSCDEHVGGSVKVARPESLQIVSSDDPNVEMLHSTNLHDIHDNGKEDDIDSPGTATSKFVEPLPLINAVSSCDVGRYNTCSGALDGIQSTAMKCLLPCAYRQVATVSACGDGNTSMEVKDGVGGNSGASFCSSTEDILCAKIISANKEYAKSASEVFTKLLPKECDKMANIGASCSSCSHDSAFIVEKFAKKKLFARFKERVITLKFKALHYLWKEDMRLLSIRKCRPKSHKKLEIGLRTISCVRQKNRSSIRSRFPFSEGNQLSLVPTSEMINYTRQLLSESQDKVHRNCLKMPALILDQKEKMISKFISSNGLVEDPLAIERERAMINPWTSEERDIFMEKFAAFGKDFRRIASFLDHKTTADCVEFYYKNHKSDCFEKIKVQDGGVKLGKLFTAKTDLMASGKKWNYQVNAASLEILSAASVMADGIAGNQNMHSGSSLLRGYGCLKTSRDEDSITKRSSGFDILQEERETVAADVLAGICGSLSSKAMSSCRTSSFHNTNRKRLKLRPLCKQPMTPDVTQNIDDETCSDEGCGEMDPSNWTDEEKATFLQAVSSFGKDFAMIAQSVGTRSQDQCKAFFSKARKCLGLDLMHPRPENVGSPVNNDTSGGRSDTEDACIVEIGSVIGTDKSGTKTDEELPSPGMNTYCDESNPVEARNLSADLNESKEIYGEEVDREVVNMVSDACVIKCESKLGSDDSGVVLYSSDKSGFVGDQGAIIMSDNLQAGKDKPNEVGGAVTELLSASELIEPCHSNPVAEVFTGGSGNKLEGSTPCVDGRDDKHEADTDVGVELKNSVHDSRLSFGAKNQLQLSHKSYFLGSSVDDPHATANSMLQNTAGASVQCVKKTILDRVSSTCDFPGSRDKNSHNSISDGGYQLLKHGNLLDHVEAARILQCYPFQVPVKKEVNGDMSCSNSATVFPILSQKIEQADGNYKTQLRCSSDSEKTSRNGDVKLFGKILSNPSSTQKPNLTAKRNEENGTHHLKLSRNSSNMKFAGHYNADKKSAILKFDHNDYRGLENVPLSYGYRDGNRIPTSFSSLPDSALFLAKYPAAFSNYPTSSAKLEQHSLQALAKNNEQHLNGVSAFTTREVNGSNGVIDYQMFRNRDGLKVQPFMVDVKHRQDMFSEIQRRNFEAISSLQGMVGMNGVGRPGIVVGGSRSGVSDPVAAIKMHYSNSDQCGSQNGSIMREDESWGGKGDLGR 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3411g00002 1667 CDD SANT 1008 1047 IPR001005 -
Gabi3411g00002 1667 Coils Coil 418 445 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 1096 1118 - -
Gabi3411g00002 1667 Pfam Myb-like DNA-binding domain 1007 1049 IPR001005 -
Gabi3411g00002 1667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1008 1058 IPR017930 -
Gabi3411g00002 1667 Gene3D - 773 845 - -
Gabi3411g00002 1667 ProSiteProfiles SANT domain profile. 792 843 IPR017884 -
Gabi3411g00002 1667 SUPERFAMILY Homeodomain-like 1006 1055 IPR009057 -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 116 134 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 34 48 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 1644 1667 - -
Gabi3411g00002 1667 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1664 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 99 115 - -
Gabi3411g00002 1667 SUPERFAMILY Homeodomain-like 780 840 IPR009057 -
Gabi3411g00002 1667 ProSiteProfiles SANT domain profile. 1007 1055 IPR017884 -
Gabi3411g00002 1667 Gene3D - 983 1064 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 208 222 - -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 1 134 - -
Gabi3411g00002 1667 SMART sant 1005 1053 IPR001005 -
Gabi3411g00002 1667 SMART sant 793 841 IPR001005 -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 8 27 - -
Gabi3411g00002 1667 ProSiteProfiles Myb-like domain profile. 1007 1051 IPR001005 -
Gabi3411g00002 1667 MobiDBLite consensus disorder prediction 208 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3411g00002 Gabi-Chr3411 5882 17552 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3411g00002 Myb_DNA-binding 7.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3411g00002 - - gsj:114403608 2088.15