Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00014 GATAGTTCAAAGAAGACTGATCCAAAGGCGCAGGCCTTGAAAACTGCTAAGGCAGTCAAGTCAGGCGCTACCTTTAAGAAGAAGGCCAAAAAGATCCGAACATCTGTTACATTCCACCGGCCAAGGACTTTGAAAAAGGATAGGAACCCTAAATATCCCCGAATCAGTGCTCCACCAAGGAATAAGCTTGATCACTATCAGATTCTGAAATATCCCTTGACAACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTACGAGCTGACAAGAAGAAGATCAAGGATGCAGTAAAAAAAATGTATGACATCCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCATATGTCAGGTTGACACCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGGATTATCTAA 447 0.4206 DSSKKTDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPRTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00014 148 FunFam 60S ribosomal protein L23a 26 148 - -
Gabi340g00014 148 Pfam Ribosomal protein L23, N-terminal domain 9 58 IPR005633 -
Gabi340g00014 148 ProSitePatterns Ribosomal protein L23 signature. 126 141 IPR001014 GO:0019843
Gabi340g00014 148 NCBIfam 50S ribosomal protein L23 72 148 IPR019985 GO:0003735|GO:0005840|GO:0006412
Gabi340g00014 148 Hamap 50S ribosomal protein L23 [rplW]. 68 148 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gabi340g00014 148 MobiDBLite consensus disorder prediction 39 59 - -
Gabi340g00014 148 PANTHER 60S RIBOSOMAL PROTEIN L23A 4 148 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gabi340g00014 148 Pfam Ribosomal protein L23 68 130 IPR013025 GO:0003735|GO:0005840|GO:0006412
Gabi340g00014 148 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 65 141 IPR012678 GO:0003735|GO:0005840|GO:0006412
Gabi340g00014 148 Gene3D - 29 148 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00014 Gabi-Chr340 140852 141810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00014 21 148 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.844 7.40e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi340g00014 K02893 - qsa:O6P43_031159 273.092