Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00012 ATGCCGATTTCTAAAATTGCCATAGGAAATCCTTCGGAGTTCAGCCAAGCCGATGCGCTTAAGGCTGCACTTGCTGAGTTCATATCAATGCTCATTTTTGTGTTTGCTGGGGAAGGCTCTGGCATGGCTTATAATAAGCTCACAAACAATGGTTCAGCAACCCCAGCTGGGGTAGTGGCAGCCTCACTGTCTCATGCCTTTGGTCTATTTGTGGCGGTCTCCGTTGGTGCTAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACTCTCTTTAGAAGCATTTTGTATTGGATTGCTCAGTTGCTCGGCTCTGTCGTTGCTTGTTTGCTCCTTAAATTTGCCACCGGTGGATTGGAAACATCAGCATTTGCACTGTCTTCTGGGGTGGGAGCAGCGAATGCACTGGTGTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACAGTGTATGCAACTGCAGTGGACCCAAAGAAGGGTGACGTTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTGGGTGCTAATATCTTGGCTGGTGGTGCATTTGACGGTGCATCTATGAACCCAGCAGTGTCTTTTGGACCCGCTGTTGTAAGCTGGACATGGGATAATCATTGGGTCTATTGGCTCGGCCCATTCATTGGTTCAGCCATTGCTGCCCTTGTCTACCAGATTTTCTTCATTACCCCAATCACTCATGAACAGCTCCCAACCAATGCCACAGATTATTAG 765 0.4732 MPISKIAIGNPSEFSQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGVVAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSSGVGAANALVFEIVMTFGLVYTVYATAVDPKKGDVGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGSAIAALVYQIFFITPITHEQLPTNATDY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00012 254 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Gabi340g00012 254 FunFam Probable aquaporin TIP1-1 4 251 - -
Gabi340g00012 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 SUPERFAMILY Aquaporin-like 16 246 IPR023271 -
Gabi340g00012 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi340g00012 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gabi340g00012 254 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00012 Gabi-Chr340 95405 96922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00012 1 250 Major Intrinsic Protein MIP AT4G01470 78.800 1.37e-140 393