Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00011 ATGGTTCAACAGGAAGTCAGAAAAGGTCCATGGACAGAACAGGAAGACTTCAAATTGATGTCCTTTGTTGGCTTGTTTGGAGACCGTAGATGGGATTTTATAGCTAAGGTGTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCATCCTGGTCTCAAAAGAGGAAAGATGACACCCCAGGAAGAGCGCCTCATACTGGAACTTCACACAAAATGGGGAAACAGGTGGTCAAGAATTGCTAGGAAATTACCAGGGCGCACTGATAATGAGATTAAGAATTACTGGAGGACTCAAATGAGGAAGAAGGCTCAAGAGAAAAAGAGGGGAGGAGCAGTTTCATCATCACCATCACCTTCTAGTGTTCACTCCTCAATATCCTCAAACAATCATTCTGTGGATTCACATGCTTCCAAAAAGGCTGGGGAAGAAAGCTTTTATGACACTGGAGGTCCTAATCTGATAGGCTCAACCCAAGTTAAGGTGGGAGAAGATCAACAAGGTGAACAAGGGTTCTCTATGGATGATATATGGAAAGATATTGATCTTTCAGATGATAACATTCTGCAGCCAGTCTATGATGGGAACAGTGAAGAGGGCTGCAACTTCTCTTGTCCAACTATGCCTTCTCCTTCATGGAAGTATTCTTCTGACCCCTTATGGGTGATGGATGAAGAGAGTTTGTTATTCCCAACAAGTGACCCTTATTTTTCCTGCTATGCACAAGGTAGTGCGTTTCTAACTGGCTAG 768 0.431 MVQQEVRKGPWTEQEDFKLMSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLILELHTKWGNRWSRIARKLPGRTDNEIKNYWRTQMRKKAQEKKRGGAVSSSPSPSSVHSSISSNNHSVDSHASKKAGEESFYDTGGPNLIGSTQVKVGEDQQGEQGFSMDDIWKDIDLSDDNILQPVYDGNSEEGCNFSCPTMPSPSWKYSSDPLWVMDEESLLFPTSDPYFSCYAQGSAFLTG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00011 255 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gabi340g00011 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 116 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi340g00011 255 MobiDBLite consensus disorder prediction 107 164 - -
Gabi340g00011 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gabi340g00011 255 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Gabi340g00011 255 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gabi340g00011 255 Gene3D - 8 60 - -
Gabi340g00011 255 SMART sant 7 57 IPR001005 -
Gabi340g00011 255 SMART sant 60 108 IPR001005 -
Gabi340g00011 255 Gene3D - 63 125 - -
Gabi340g00011 255 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gabi340g00011 255 CDD SANT 10 55 IPR001005 -
Gabi340g00011 255 MobiDBLite consensus disorder prediction 117 141 - -
Gabi340g00011 255 FunFam MYB transcription factor 63 131 - -
Gabi340g00011 255 CDD SANT 63 104 IPR001005 -
Gabi340g00011 255 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gabi340g00011 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gabi340g00011 255 FunFam Myb transcription factor 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00011 Gabi-Chr340 84336 85664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00011 1 232 MYB Transcription Factor Family AT5G59780 60.256 6.58e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi340g00011 Myb_DNA-binding 3.2e-14 CL0123