Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00010 ATGGACAGAACAGGAAGATTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCATCCTGGTCTCAAAAGAGGAAAGATGACACCCCAGGAAGAGCGCCTCATACTGGAACTTCACACAAAATGGGGAAACAGGTGGTCAAGAATTGCTAGGAAATTACCAGGGCGCACTGATAATGAGATTAAGAATTACTGGAGGACTCAAATGAGGAAGAAGGCTCAAGAGAAAAAGAGGGGAGGAGCAGTTTCATCATCACCATCACCTTCTAGTGTTCACTCCTCAATATCCTCAAACAATCATTCTGTGGATTCACATGCTTCCAAAAAGGCTGGGGAAGAAAGCTTTTATGACACTGGAGGTCCTAATCTGATAGGCTCAACCCAAGTTAAGGTGGGAGAAGATCAACAAGGTGAACAAGGGTTCTCTATGGATGATATATGGAAAGATATTGATCTTTCAGATGATAACATTCTGCAGCCAGTCTATGATGGGAACAGTGAAGAGGGCTGCAACTTCTCTTGTCCAACTATGCCTTCTCCTTCATGGAAGTATTCTTCTGACCCCTTATGGGTGATGGATGAAGAGAGTTTGTTATTCCCAACAAGTGACCCTTATTTTTCCTGCTATGCACAAGGTAGTGCGTTTCTAACTGGCTAG 681 0.4302 MDRTGRFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLILELHTKWGNRWSRIARKLPGRTDNEIKNYWRTQMRKKAQEKKRGGAVSSSPSPSSVHSSISSNNHSVDSHASKKAGEESFYDTGGPNLIGSTQVKVGEDQQGEQGFSMDDIWKDIDLSDDNILQPVYDGNSEEGCNFSCPTMPSPSWKYSSDPLWVMDEESLLFPTSDPYFSCYAQGSAFLTG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00010 226 Gene3D - 6 31 - -
Gabi340g00010 226 Gene3D - 34 97 - -
Gabi340g00010 226 ProSiteProfiles Myb-like domain profile. 27 77 IPR001005 -
Gabi340g00010 226 MobiDBLite consensus disorder prediction 88 112 - -
Gabi340g00010 226 Pfam Myb-like DNA-binding domain 32 75 IPR001005 -
Gabi340g00010 226 CDD SANT 34 75 IPR001005 -
Gabi340g00010 226 FunFam MYB transcription factor 34 102 - -
Gabi340g00010 226 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 87 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi340g00010 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 81 IPR017930 -
Gabi340g00010 226 MobiDBLite consensus disorder prediction 78 135 - -
Gabi340g00010 226 SMART sant 31 79 IPR001005 -
Gabi340g00010 226 SUPERFAMILY Homeodomain-like 12 81 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00010 Gabi-Chr340 84296 85663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00010 6 203 MYB Transcription Factor Family AT3G46130 58.500 1.55e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi340g00010 Myb_DNA-binding 3.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi340g00010 K09422 - qsa:O6P43_028279 293.508