Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00009 ATGTCTTCTCAAGGATGTGATCATCACGGTTATGGCGTCCATTTTTTCAAGATTATTCTTGAAAGCAACATCCGAGATGGAGAGCTGAGAGTACCAAGAAGTTTTGTGAGGAGACATTGGCAAGGAATATCAAACCCTGTTTGTCTAAGGCTTCCAAATAGTACTGAATGGAAAGTTTATTGGATGAAACGTGACGGTGATGTTTGGTTTCGCAATGGTTGGAAAGAATTTGCACAATACTTGTCTTTGGATGTGTCACAGTTTGTGGTGTTTCGTTATGAAGAAAATTCTTACTTTAATGTGATTATATTTGATAAGAGTGCTTTAGAAATAAAATACCCTTCTAGAGTTGCTGATGAAAAAAGTGAAGAGGTTAATGAGAGTGATTATTCTTTGAAAATTCTTGAGAATTGTTCACCATTTGAGGGTAAAAGGGAAAAAACTCCATCACCATCATCTCAAACTCGTAAGAAGATGAAAACCAACCCAAAAGAAGAACAAGGTGATGCAGGTTTTGATAATGCTAAGCATATGAATAGTGAGTAG 546 0.3626 MSSQGCDHHGYGVHFFKIILESNIRDGELRVPRSFVRRHWQGISNPVCLRLPNSTEWKVYWMKRDGDVWFRNGWKEFAQYLSLDVSQFVVFRYEENSYFNVIIFDKSALEIKYPSRVADEKSEEVNESDYSLKILENCSPFEGKREKTPSPSSQTRKKMKTNPKEEQGDAGFDNAKHMNSE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00009 181 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Gabi340g00009 181 CDD B3_DNA 14 105 IPR003340 GO:0003677
Gabi340g00009 181 SMART B3_2 15 107 IPR003340 GO:0003677
Gabi340g00009 181 MobiDBLite consensus disorder prediction 141 181 - -
Gabi340g00009 181 SUPERFAMILY DNA-binding pseudobarrel domain 13 107 IPR015300 -
Gabi340g00009 181 Gene3D - 11 108 IPR015300 -
Gabi340g00009 181 PANTHER B3 DOMAIN-CONTAINING 13 165 - -
Gabi340g00009 181 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Gabi340g00009 181 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00009 Gabi-Chr340 70731 71660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00009 15 114 B3 DNA Binding Superfamily AT4G01580 37.000 1.30e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi340g00009 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi340g00009 - - lang:109332968 220.32