Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00008 ATGAGTAAGCACCCTGACCCCACTCCAATCCGTTTCTTCAAGATTATTCCTGGAACAAGTCTTCAAGAAGGAAAGCTGAGGATCCCAAAAAAATTCATTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTTAAGCCTCCAGATGGCACTAAATGGGAAGTATTTTGGACTGAAAATGATGGTGATATTTGGCTTCAAAGGGGTTGGATAGAATTTGCCACATATTACTCCCTGGATCATGGTCATTTGCTGTTGTTTGAATACAAGCAAACTTGTAATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATAGATTATCCTTTGTATGTCCCTCAAGATGCACAGGACAACCTTGACCAGACTAGTGATGATGAGTCAATTAAAATTTTGGATGCGGTACCACCACGCCATAAGACTAGACAAAAATCACCAATGCCTTCTCCTCAACCACGTAAAAAATCAAGATCTGACACAAGTGGAGGTGTGGAGAGAAGATCCACTGAGCAAAATCTGCCTCATCATGCCCAAACTGAAGGCACAAACTTTGAGAAGTCTAAGTTTGCATCTGTAAAGAAAGAATCGGATGGATTTCCTTTCCGTGGCACTCAATATGGGCAACCACCATGCCAGAACACTAGACTGAAATCACCAGTGGCTTGTCCTCAATCACGTAACAAATTGAAAACTAGCACAAGATCAGGTGATCGGTCTCAAGGGACAAACTTTGGTAAATCTAAAATGGCAGCTGTCAAGAAAGAATTGGATGAGGATGTGGATGGTACCTCCCCCAACACAAATGGAGCTCTGAAAGAAGCTGATAAATTTGCCTCAGAAAATCCCTTTTTCACAGTCAAAGTGAGGCCGGGAATTCAATCTAGACCGTCGTAA 900 0.4167 MSKHPDPTPIRFFKIIPGTSLQEGKLRIPKKFIRKYGGDMSNPMFLKPPDGTKWEVFWTENDGDIWLQRGWIEFATYYSLDHGHLLLFEYKQTCNFEVHIFDKSTLEIDYPLYVPQDAQDNLDQTSDDESIKILDAVPPRHKTRQKSPMPSPQPRKKSRSDTSGGVERRSTEQNLPHHAQTEGTNFEKSKFASVKKESDGFPFRGTQYGQPPCQNTRLKSPVACPQSRNKLKTSTRSGDRSQGTNFGKSKMAAVKKELDEDVDGTSPNTNGALKEADKFASENPFFTVKVRPGIQSRPS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00008 299 MobiDBLite consensus disorder prediction 160 175 - -
Gabi340g00008 299 PANTHER B3 DOMAIN-CONTAINING 2 224 - -
Gabi340g00008 299 MobiDBLite consensus disorder prediction 135 277 - -
Gabi340g00008 299 SMART B3_2 12 104 IPR003340 GO:0003677
Gabi340g00008 299 Gene3D - 6 105 IPR015300 -
Gabi340g00008 299 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Gabi340g00008 299 MobiDBLite consensus disorder prediction 208 248 - -
Gabi340g00008 299 CDD B3_DNA 11 102 IPR003340 GO:0003677
Gabi340g00008 299 ProSiteProfiles B3 DNA-binding domain profile. 11 104 IPR003340 GO:0003677
Gabi340g00008 299 Pfam B3 DNA binding domain 12 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00008 Gabi-Chr340 58800 60531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00008 11 133 B3 DNA Binding Superfamily AT4G01580 37.398 5.09e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi340g00008 B3 2.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi340g00008 - - lang:109359484 224.942