Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi340g00004 ATGGAAAGAGAGTTTGATAGAACAACATACATAAAGAAAGGGCCATGGAGTTGTGAGGAAGATGAGGTTCTTTTAAAGCATGTAAACAAGTATGGTCCAAAAGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACTGGAAAATCTTGTCGCCTTAGATGGGTTAACAAGCTTAGACCCAACTTGAAATCTGGCTGCAAGTTTTCAGCAGAGGAGGAAAGGGTTGTGATAGAATTGCAGGCACAATTTGGGAACAAATGGGCTAAAATTGCTACATATTTGCAAGGGAGAACCGACAATGATGTGAAAAATTTCTGGAGCAGTAGGAGGAAAAGGTTGGAGAGAATGTTGCAAAGGCCATCACAGCAGAAAAACAAAGGAAAAGCTCCTCTTAATCAAGTACAAGTTGAAGAGGTTCCTCCGTGTAGTTCTAATCAGCTGGAAGAAAGCCTTACTTACTCTACTTCCTATATGGGAAACACTGAGGTGTTTGAGATGGTCAACCTACCAGATTTGACAAAGTCAAACTACCAAAGTTTGGAGAGTGACCTGAATGCAGTTAAGGTTGAGGCCACCCCACTTCATATGGTAACACCTTTTGAGTCTTCATCAGGGTACAACTTTCCTCTACTCCCTGAACCACAAATGGACTTTCCACTATTCCCAGAGTGCCACGACCTCGTTCCGGAGCACTATGACACTAACTTGATTGGTATGTTCGAGCAGAAAAAATGTTCAGAATGTTTATACGGCCAGAAGCTTGGGACTAGGTTGCCAACTCTTGGATTGGAAGGAAATTCTCAAAGTACAAGTTCAAATGGCTTCTTTAAGGACTTCCCAACTGATATTTTTGAATACTTTGAGCATATTCCATCCTCATCAGAACAATGA 897 0.4181 MEREFDRTTYIKKGPWSCEEDEVLLKHVNKYGPKDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKSGCKFSAEEERVVIELQAQFGNKWAKIATYLQGRTDNDVKNFWSSRRKRLERMLQRPSQQKNKGKAPLNQVQVEEVPPCSSNQLEESLTYSTSYMGNTEVFEMVNLPDLTKSNYQSLESDLNAVKVEATPLHMVTPFESSSGYNFPLLPEPQMDFPLFPECHDLVPEHYDTNLIGMFEQKKCSECLYGQKLGTRLPTLGLEGNSQSTSSNGFFKDFPTDIFEYFEHIPSSSEQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi340g00004 298 FunFam MYB transcription factor 13 65 - -
Gabi340g00004 298 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi340g00004 298 PANTHER TRANSCRIPTION FACTOR DUO1 6 297 - -
Gabi340g00004 298 SMART sant 66 114 IPR001005 -
Gabi340g00004 298 SMART sant 12 62 IPR001005 -
Gabi340g00004 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Gabi340g00004 298 CDD SANT 69 108 IPR001005 -
Gabi340g00004 298 CDD SANT 15 60 IPR001005 -
Gabi340g00004 298 Pfam Myb-like DNA-binding domain 16 66 - -
Gabi340g00004 298 Gene3D - 68 137 - -
Gabi340g00004 298 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Gabi340g00004 298 Pfam Myb-like DNA-binding domain 69 109 IPR001005 -
Gabi340g00004 298 Gene3D - 7 66 - -
Gabi340g00004 298 FunFam Transcription factor GAMYB 68 139 - -
Gabi340g00004 298 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi340g00004 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi340g00004 Gabi-Chr340 42110 43908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi340g00004 11 294 MYB Transcription Factor Family AT3G60460 43.450 1.83e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi340g00004 Myb_DNA-bind_6 7.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi340g00004 K09422 - gmx:100793689 470.314