Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3408g00003 ATGGCCGAAATCGAAATTCCTCAATATTTTGTTTGTCCCATTTCGCTTCAGATTATGAAGGACCCTGTGACTGCAGTAACAGGCATAACATACGAAAGAGAAAGCATCGAGCAATGGTTGTTGAAAACCAAAGTTTGTGTGTGCCCAGTTACAAAGCAACCATTGCCAAGAAGCTCAGAGTACTTGACACCCAACCACACGTTACGAAGGTTAATCCAAGCATGGTGTTCATCAAATGCATCCAACGGTGTCGATCGAATTCCAACCCCAAAAACCCCTCTTGACAAGATCCATGTTCAGAAGCTTGTAAGAGATCTTGATGTTCCTCAATGCTCACAAACGGTGTTGGAGAAGATGCTTGCCCTGGCTACAGAGAGCGAGAGGAACAGAACATGTATGGCGGAAGAAGGAGTAGCAAAAGCTATGGTTATGTTGATTAACAAGAATTTCAAGGAAGGGAAAAACAATTGCCCAGAAGAAGCTTTGAGAATTGTTCATCTTCTTTGGAACATTCCAACCATGGTCAACAACATGAAACATCTAGTTGGTAAAAATTTAGACTTCATCAATTCGTTGACTTGGATTTTGCAACTTCACATGGATCACAACTTCAAGATGGTGAATGAAGCACTGACCCTTTTGAAATTGACAATTGAAGTTGCTGATTCAACCCCATTAGGGAGTTTAAACCTTGAATTCTTCAGAGAAATCATGAGAGTGTTGCGAAAGAGAGCACTACTCTCTCAACAAGCTATTAAATCTGCTTTGCATGTTCTTATAAAAACGTGCCCTTTGGGTAGAAACAGAACAAGGATAGTGGAAGCAGGTGCAGTCAAAGAACTCATAGAGATTGAGCTTGAAAAACCGGAGAAGAATCTAACAGAGCTCATATTTAACCTTTTGGCACAACTATGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGTTGCATGCAGCAGGGATAGCAATGATTTCAAAAAGGATTTTGAGGGTTTCTCCAGCAACAGATGACCGAGCACTTAATATATTTTTGGTGATTGCTAGGCATTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTTGGAGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCCGATTGTGCTTCGTATTTGAAAGAAAAAGCAAGAGATACACTTAGGTTACACTCCAAAGTTTGGAATAATTCTCCTTGTATACAAGTGTATTTGTTAACTAGGCACCAAAGATGA 1236 0.4053 MAEIEIPQYFVCPISLQIMKDPVTAVTGITYERESIEQWLLKTKVCVCPVTKQPLPRSSEYLTPNHTLRRLIQAWCSSNASNGVDRIPTPKTPLDKIHVQKLVRDLDVPQCSQTVLEKMLALATESERNRTCMAEEGVAKAMVMLINKNFKEGKNNCPEEALRIVHLLWNIPTMVNNMKHLVGKNLDFINSLTWILQLHMDHNFKMVNEALTLLKLTIEVADSTPLGSLNLEFFREIMRVLRKRALLSQQAIKSALHVLIKTCPLGRNRTRIVEAGAVKELIEIELEKPEKNLTELIFNLLAQLCSCADGREQFLLHAAGIAMISKRILRVSPATDDRALNIFLVIARHSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKARDTLRLHSKVWNNSPCIQVYLLTRHQR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3408g00003 411 SUPERFAMILY ARM repeat 119 399 IPR016024 -
Gabi3408g00003 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Gabi3408g00003 411 SUPERFAMILY RING/U-box 4 81 - -
Gabi3408g00003 411 Gene3D - 99 398 IPR011989 -
Gabi3408g00003 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gabi3408g00003 411 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
Gabi3408g00003 411 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gabi3408g00003 411 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gabi3408g00003 411 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3408g00003 Gabi-Chr3408 27614 28852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3408g00003 3 401 U-box Gene Family AT2G35930 41.935 1.90e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3408g00003 - - gmx:100811293 602.823