Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3406g00002 ATGACAGATCCTCACTCCAATTTATTCGATGGATGGTTCAAGTTCATGCTCCTACACCCTCACTACTCTTCTTCTTCTCAATCCAAATTGTGTTCATCATACCCTTTTGCTTACTCAAACAACTGGTTTGGAATTCAATCCGAACCCTCATCTTCCTCTGCAGTTCCTCCACCTCCTCCTCCTCCTCCTCCAAGAGAGGCTCTTCCTCTCATTAACAAGTTAAGCCTCATCACAAATCAGCATGGAAATGAACACTCAAACAGTAATAGTGCAATAGAAGACAAACATGAGAGTCTTTTGACTGGTCCTGAAGATGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGGTAGTACTACTTCTGATCTGGGGTTGAGGATGGTCCCAACTTCAATAGAAATGGCTGAAAAAGAGGACGTGAATATGATTTCTGAACAGCCTTTGGATAAATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACTCAGTTTTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATCTATGGGGACACGGATCTCAATACAGAAAGGGACCTGATTCTCTTAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGCTTTTGTTGTGCACCAGGCTGCAAGCATAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGGAAGCATGGCATAAAACCCTATATGTGCAGAAAATGTAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGGAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCTCTAAAAGACCACATCAAAGCCTTTGGATATGGCCATGGAGCTCTTGGCATTGATTGCATGCAAGAAGAAGATGAAGCAGCATCCGAAATTGAACATGATGGGGAGAGCTCATTGTGA 1014 0.4221 MTDPHSNLFDGWFKFMLLHPHYSSSSQSKLCSSYPFAYSNNWFGIQSEPSSSSAVPPPPPPPPPREALPLINKLSLITNQHGNEHSNSNSAIEDKHESLLTGPEDDDETVTVALHIGLPRMGSTTSDLGLRMVPTSIEMAEKEDVNMISEQPLDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHLWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGALGIDCMQEEDEAASEIEHDGESSL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3406g00002 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Gabi3406g00002 337 PANTHER ZINC FINGER PROTEIN WIP2 25 331 IPR043584 GO:0003700|GO:0010468
Gabi3406g00002 337 FunFam Zinc finger protein WIP2 229 311 - -
Gabi3406g00002 337 SMART c2h2final6 260 280 IPR013087 -
Gabi3406g00002 337 SMART c2h2final6 176 198 IPR013087 -
Gabi3406g00002 337 SUPERFAMILY beta-beta-alpha zinc fingers 244 280 IPR036236 -
Gabi3406g00002 337 FunFam zinc finger protein WIP2-like 175 198 - -
Gabi3406g00002 337 Pfam Zinc finger, C2H2 type 176 195 IPR013087 -
Gabi3406g00002 337 MobiDBLite consensus disorder prediction 47 68 - -
Gabi3406g00002 337 Gene3D Classic Zinc Finger 230 311 - -
Gabi3406g00002 337 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Gabi3406g00002 337 MobiDBLite consensus disorder prediction 52 68 - -
Gabi3406g00002 337 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Gabi3406g00002 337 Gene3D Classic Zinc Finger 175 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3406g00002 Gabi-Chr3406 38358 40634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3406g00002 1 330 C2H2 Transcription Factor Family AT3G57670 55.200 4.03e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3406g00002 zf-C2H2 0.0016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3406g00002 - - gmx:100794446 525.398