Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3405g00003 ATGTCAACCGCCCCCGCTCCCTCCTCGCCGCCGGCGACCAACACCACCTCTCCTCCGCCGTCAACCCCCGCCACACCTTCCGCACCAGCCCCCACCACTCCTTCCGCGCCTCCTCCGGCCACTCCATCCTCACCGCCGCCGGCCACCCCCTCTTCACCGCCTCCTCCGGCCACTCCTTCGTCTCCTCCGCCGGCAACTCCCTCCGCTCCTCCACCGGCAACTCCCTCCGCGCCTCCACCAGCCACTCCTTCCTCCTCGCCGCCGCCGCCTGCAACGCCGTCGTTATCTCCGCCATCGCCGCCTTCTCCGTCTAGCGGTGGCCACACTACTCCGAGTCCACCATCTCGGAGCCCGCCCACTCCTCCGTCAAGCTCGAATAAAGCTCCACCTCCGCCGTCGTCAAATTCTTCTCCGTCGTCGTCGTCGAGTATTTCGACCGGCGTCGTCGTCGGAATCGCCGTCGGAGCCGTTGCGGTTCTTCTGGTGTTCAGCATTCTGTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAGGAATACGATGCTCCGCCGCCGCGGGGACCCAAAGATGATCCATATGGTGGTCCTCCACGTCACTGGCAACATAATGCTCCCCCTCCTTCAGATCATGTAATCTCAATGATTCCTAAGCCATCACCTGCTCCTCAACCTGTTGCTTATGCTGCTCCGCCTCCTCCTCCTCCTTTCATGAGCAGCAGTGGTGGGTCTGGATCAAACTATTCTGGTGGTGAAAATCCACTTCCACCTCCTTCTCCAGGCCTCTCATTGGGCTTCTCAAAGAGCACTTTTACATATGAGGAGTTGGCACGCGCAACCGATGGTTTCTCCGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCATAGAGGAATTCTTCCCAATGGTAAGGAGGTTGCAGTTAAGCAGCTAAAGGCTGGAAGTGGGCAAGGGGAACGCGAATTTCAAGCTGAAGTAGAGATCATTAGCCGTGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGATCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCATTTACATGGAAAAGGGAGACCTACCATGGATTGGTCCACAAGGCTAAGAATTGCTTTAGGATCTGCAAAAGGACTGGCATATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAACATTCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGTCTTGCCAAGTTTACTTCTGATGTCAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCTCAGACAAATCAGATGTTTTCTCCTTTGGAGTCATGCTCCTTGAATTAATAACTGGACGGCGGCCAGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTGGACTGGGCTAGGCCTTTGCTCACACGTGCTTTGGAAGAGGATGATTTTGACTCTCTGATTGACCCAAGGCTCCAGAATGAATATGATCCTAATGAGATGCTTCGTATGGTGGCATGTGCTGCAGCTAGCACGCGTCATTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTTCGTGCTCTGGAAGGAGATGTGTCTTTAGCTGATCTTAATGAAGGAATCAGACCTGGACACAGCACTGTCTACAGTTCTCATGGAAGCTCAGATTATGATACAACACAATACAAGGAAGACATGAAAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAGTATGGTGCCAGCAGTGAGTACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGTTCAAGCAGTGAAGCACAGAGCCGCCAGACCACACGGGAAATGGAAATGAGAATGATGAAGAACAACAACAGTAAAGGTTTCAGTGGAAGCTCTTGA 1974 0.5122 MSTAPAPSSPPATNTTSPPPSTPATPSAPAPTTPSAPPPATPSSPPPATPSSPPPPATPSSPPPATPSAPPPATPSAPPPATPSSSPPPPATPSLSPPSPPSPSSGGHTTPSPPSRSPPTPPSSSNKAPPPPSSNSSPSSSSSISTGVVVGIAVGAVAVLLVFSILCICCRKKKRRRDEEYDAPPPRGPKDDPYGGPPRHWQHNAPPPSDHVISMIPKPSPAPQPVAYAAPPPPPPFMSSSGGSGSNYSGGENPLPPPSPGLSLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGIQRLLVYEFVPNNTLEFHLHGKGRPTMDWSTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLSDKSDVFSFGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDDFDSLIDPRLQNEYDPNEMLRMVACAAASTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTVYSSHGSSDYDTTQYKEDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRMMKNNNSKGFSGSS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3405g00003 657 SMART serkin_6 283 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 212 239 - -
Gabi3405g00003 657 FunFam proline-rich receptor-like protein kinase PERK1 261 358 - -
Gabi3405g00003 657 Gene3D Phosphorylase Kinase; domain 1 263 358 - -
Gabi3405g00003 657 SUPERFAMILY Protein kinase-like (PK-like) 257 556 IPR011009 -
Gabi3405g00003 657 Pfam Protein tyrosine and serine/threonine kinase 288 554 IPR001245 GO:0004672|GO:0006468
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 11 136 - -
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 612 657 - -
Gabi3405g00003 657 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 155 619 IPR047117 -
Gabi3405g00003 657 Gene3D Transferase(Phosphotransferase) domain 1 359 566 - -
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 612 635 - -
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 174 197 - -
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 1 145 - -
Gabi3405g00003 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Gabi3405g00003 657 FunFam Proline-rich receptor-like protein kinase PERK1 359 567 - -
Gabi3405g00003 657 MobiDBLite consensus disorder prediction 174 263 - -
Gabi3405g00003 657 ProSiteProfiles Protein kinase domain profile. 283 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3405g00003 657 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3405g00003 Gabi-Chr3405 15010 19302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3405g00003 100 638 Trihelix Transcription Factor Family AT1G70460 50.369 8.98e-172 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gabi3405g00003 PK_Tyr_Ser-Thr 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3405g00003 - - gmx:100781944 808.135