Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00036 ATGGCGAGTGGTTTTGGGGAATCAATTAGAGCGTCTTCTCCGAGTCCATCTTGCTCGGGGAATAGTCCCAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTAGCTCAAGACCCAGTGATCACTTTGTGTGGTCATTTGTTCTGTTGGCCATGCCTTTATAGGTGGCTTCATCATCACTCCCATTCTCAAGAGTGCCCCGTTTGCAAGGCCCTCGTGCAGGAAGAGAAATTGGTTCCACTTTATGGGAGGGGTAAAACACAGACTGATCCAAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCCCAAACGGCGCCTCCTCCTCCTCCTCCTGAAGCCAATCCATTTGGGAATTATGGGTTTGGACTTATGGGAGGTTTCATTCCCATGGCAACTGCCAGGATTGGGAACTTCACGCTTTCCACTGCTTTTGGTGGTTTTATACCATCTCTGCTCAACATTCACTTCCACGGGTTTCAGGATGCCACTGTCTATGGGACAACGTCTGGATATCCCTTTGGGATGAATGCGTTTCATGGAGGGAACCCGCGAGTTTTTCCACACGCAACTGGTCAAGTGCAGCGGCAGGAGGACAATGTTCTGAAGAATCTGCTTTTGTTGATTGGATTTCTTGTCCTTCTTACAGTTGTTTTTGTGTGGTGA 693 0.4892 MASGFGESIRASSPSPSCSGNSPNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPEANPFGNYGFGLMGGFIPMATARIGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGMNAFHGGNPRVFPHATGQVQRQEDNVLKNLLLLIGFLVLLTVVFVW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00036 230 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3404g00036 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 94 IPR013083 -
Gabi3404g00036 230 SMART ring_2 31 71 IPR001841 -
Gabi3404g00036 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Gabi3404g00036 230 SUPERFAMILY RING/U-box 27 84 - -
Gabi3404g00036 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Gabi3404g00036 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gabi3404g00036 230 MobiDBLite consensus disorder prediction 110 125 - -
Gabi3404g00036 230 MobiDBLite consensus disorder prediction 84 125 - -
Gabi3404g00036 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi3404g00036 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Gabi3404g00036 230 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00036 Gabi-Chr3404 399274 401005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00036 21 228 C3H Transcription Factor Family AT2G23780 62.911 4.57e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00036 K10666 - gmx:100814783 393.66