Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00031 ATGAAAATGAATGTCATCGATCGATGCTGGAGACCGAATCCAGAATGGAGGAAAAATCGGCCTCAACTAGCCACATGCTCCGTTGGCTATGCTGGCAAGATGATGAACAACATTGGTAAGGACCTCATGCATTATAAAGTTACTGACCCCACTGATGACCCTATAAACCCCAGACCTGGCACCTTGAGGTATGGAGCTTCTGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAGACTCGGAAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTCAACGTCCACATTCTTGATAATGCATGCTTGATGATCTCAAAGGCCACCAATGTAATCATCCATGGAATTCGGGTTCATAATTGCAAAGCTCAAGCCCCTGGGATGGTGATGGGTCCAAATGGAAAGGTAATTCCTTTGGGCCAAGTAGATGGGGATGCAATCAGATTGGTTACTGCTTCAAATATTTGGATTGATCATAATACCCTTTATGATTGCCAAGATGGTCTTCTTGATGTCACGCGTGGTTCCACTAATGTGACTGTATCCAACAACTGGTTCAGAGACCAAGACAAGGTTATGCTTCTTGGGCATGACGATGGGTATGTGAGGGACCAGAACATGAAGGTTACTGTTGTGTACAACCATTTTGGACCTAGTTGCAACCAGCGCATGCCAAGGATCCGCCATGGATATGCACATGTAGCCAACAATCTTTACCAGGGATGGCTGCAATATGCCATCGGAGGAAGCATGGGACCTAGCCTTAAAAGCGAAGCTAACCTCTTCATAGCACCGAAATCGGGGAGTAAGGAGGTAACATGGAGAAAAAGTAGTAATACAAATGGGGACAGATGGGAATTTCATTCAGTGAGGGACGCTTTTGAAAATGGAGCTTCCTTCGATGTAACAAAAGGTGGACGTGTCCCAAAGCCGAATTATAGCAGGGAACAAGGTTTCAAAGTTGTTGACGCCAGAGCTGTGAGATCATTGACAAGATCATCAGGTGCATTAAGATGCAGTCATACCTCTATATGTTGA 1065 0.4488 MKMNVIDRCWRPNPEWRKNRPQLATCSVGYAGKMMNNIGKDLMHYKVTDPTDDPINPRPGTLRYGASVIQGKVWITFQRDMHIRLGKPLLISSFTTIDGRGVNVHILDNACLMISKATNVIIHGIRVHNCKAQAPGMVMGPNGKVIPLGQVDGDAIRLVTASNIWIDHNTLYDCQDGLLDVTRGSTNVTVSNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPSCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMGPSLKSEANLFIAPKSGSKEVTWRKSSNTNGDRWEFHSVRDAFENGASFDVTKGGRVPKPNYSREQGFKVVDARAVRSLTRSSGALRCSHTSIC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00031 354 SMART amb_all 80 277 IPR002022 -
Gabi3404g00031 354 Gene3D - 3 347 IPR012334 -
Gabi3404g00031 354 SUPERFAMILY Pectin lyase-like 3 336 IPR011050 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 232 251 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 152 173 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 294 318 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 26 43 IPR018082 -
Gabi3404g00031 354 PRINTS Pollen allergen Amb family signature 88 104 IPR018082 -
Gabi3404g00031 354 PANTHER PECTATE LYASE 18-RELATED 2 350 IPR045032 GO:0030570
Gabi3404g00031 354 Pfam Pectate lyase 91 271 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00031 Gabi-Chr3404 361455 362883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00031 34 281 Polysaccharide Lyase AT5G09280 72.984 2.15e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00031 K01728 - gmx:100780437 647.121