Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00030 ATGATTCAGGGGCAACAACCTTACATTGGTATGGCCACAACACATTGCCTTGGACATGGTCCTTATTATCAGGCAAACACATCCTACGTTGTCCAGAATACAGACACCAACTTTTTGATTGCAAACAACACTTTTGAAGGCCTCTCAACTTGTCAATCTTTGCAGGAACAAAACCACAACCCTGGAGATTTATTCTCCGGTAGAGAACTTGCAGTTCCTCTTAGATGTGCTTGTCCCACCAAGAACCAAACTGAGAATGGCATCATGTACCTCTTAAGTTACCTTGTAAACAAGGGTGAATATGTTTCACTCATTAGTGAAAGATTTGGTGTCAGCACTGAGACCACTCTTGAAGCAAATAGCCTTACTATGACACAAGCCACCATCTATCCCTTTACAACACTTCTAGTTCCCCTTCATGATAGGCCCTCAAATTCTCAAACCGTTTTGCAAGCTCCACCACCTTCGCCACCCTCACCTCCCTCTTCTTCCACAGGTCAAAGTTCAAGCAAAACGTGGGTGTATGTAGTTGTTGGGGTTGTTGTTGCCTTGATATTAGTTCTTGGTGCTGTCATTCTCTACAGATACTGTGGCAAAAGTAAAAGGAAAAAAGATTCAGTGGTTGTTTCTGAGAGTTTTGGGGCAACTGAGAAACCACAAGAGAAGGGAATGGAGAAAGTGAACGAAAGTTTGTCAGAGATTATATCTGGCATAGCTCAATCGTTCAAAGTGTACAGTTTTGAGGAATTGCAGCGTGCAACAGATAATTTTAGTCAAAGCTGTTTGATTAAAGGTTCTGTTTATCGCGGTGTTATTAAAGGAGATTTGGCTGCAATTAAGAAGACAGAAGGAGATGTTTCGAAAGAGATAGAAATATTGAACAAAGTCAACCATTCTAATGTTATACGCCTCTCTGGGGTTAGCTTCAACGAGGGTCATTGGTATCTTGTTTATGAGTATGCTGCTAATGGATCCTTGAGTGATTGGATCTTCTTCAACAACGGGGATGTGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGACTATCTTCATAGTTCCACTTATCCTCTCCATATCCACAAGGATCTAAAGATCACTAATATTCTTCTGGATAATGATTTCAGGGCAAAGGTTGCAAACTTAAGCCTTGCGAGGTCTTTGGAAAGAGACGGTGACCAATTTCCCGCGACAAGACATATTGTTGGGACAAGGGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTCTTCGCATTTGGGGCACTGATGTTGGAAATCCTCACCGGAAAAGAGGTTGCTACTATTTTAGCACAAGATAATACTAATCTGTCTGATGTTTTAAGTGCCATACTTGGGGAGGAAAGTGGTCAGCAGAGGTTGAAGGAGTTTATGGATCCCTCTCTCCAAGCTAATTACCCGTTAGAACTTGCTATATTTGTGGTTGGAATGATAGATAATTGCATGAAGAAAGATCCAACAAGTCGCCCTGCAATGTATGAGATTGTGCAATCTTTGTCCATAACCTTGAACTCTTCATTGAGTTGGGAAATGTCAGTGAATATCTCAGGATACTAG 1623 0.4159 MIQGQQPYIGMATTHCLGHGPYYQANTSYVVQNTDTNFLIANNTFEGLSTCQSLQEQNHNPGDLFSGRELAVPLRCACPTKNQTENGIMYLLSYLVNKGEYVSLISERFGVSTETTLEANSLTMTQATIYPFTTLLVPLHDRPSNSQTVLQAPPPSPPSPPSSSTGQSSSKTWVYVVVGVVVALILVLGAVILYRYCGKSKRKKDSVVVSESFGATEKPQEKGMEKVNESLSEIISGIAQSFKVYSFEELQRATDNFSQSCLIKGSVYRGVIKGDLAAIKKTEGDVSKEIEILNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGSLSDWIFFNNGDVKFLSWTQRIQIALDVATGLDYLHSSTYPLHIHKDLKITNILLDNDFRAKVANLSLARSLERDGDQFPATRHIVGTRGYMAPEYLENGLVSTKLDVFAFGALMLEILTGKEVATILAQDNTNLSDVLSAILGEESGQQRLKEFMDPSLQANYPLELAIFVVGMIDNCMKKDPTSRPAMYEIVQSLSITLNSSLSWEMSVNISGY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00030 540 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 534 - -
Gabi3404g00030 540 Gene3D LysM domain 80 151 IPR036779 -
Gabi3404g00030 540 ProSiteProfiles LysM domain profile. 92 137 IPR018392 -
Gabi3404g00030 540 SUPERFAMILY Protein kinase-like (PK-like) 234 521 IPR011009 -
Gabi3404g00030 540 Gene3D Phosphorylase Kinase; domain 1 228 320 - -
Gabi3404g00030 540 SMART serkin_6 257 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00030 540 Pfam Protein kinase domain 280 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00030 540 ProSiteProfiles Protein kinase domain profile. 202 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00030 540 Pfam LysM domain 94 138 IPR018392 -
Gabi3404g00030 540 MobiDBLite consensus disorder prediction 144 168 - -
Gabi3404g00030 540 Gene3D Transferase(Phosphotransferase) domain 1 322 534 - -
Gabi3404g00030 540 SMART LysM_2 28 73 IPR018392 -
Gabi3404g00030 540 SMART LysM_2 93 138 IPR018392 -
Gabi3404g00030 540 FunFam PTI1-like tyrosine-protein kinase 3 321 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00030 Gabi-Chr3404 351145 353161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00030 22 534 Receptor kinase-like Gene Family AT2G33580 42.514 1.93e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3404g00030 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00030 - - gmx:100815842 698.738