Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00028 ATGGCTGTCTTCGTTCTTCTGAGTCTTCTTCTTGCACAGATGTTGTTTTTCACTAAAATCGCTGGTCAATCACAACAGACCCATGGAACAAAATTTTCATGCCCTGTGGATTCACCTCCTTCATGTGAAACATATGTGACATACATTGCCCAGTCTCCAAATTTTTTAAGTCTAACCAACATATCTGATATATTTGATACCAGTCCTTTATCCATTGCAAGAGCCAGTAACTTAGGTGCTGAGGATGACAAGCTGATACCAGGCCAAGTTTTACTTGTACCAGTAACATGTGGTTGCATGGGAAACCACTCTTTCGCCAATATCTCCTACGAGATCAAGCAAGGTGATAGCTACTCCTTTGTTGCAACCACTTCATACGAGAACCTCACCAATTGGCAGATAGTGATAGCTTTAAACCCTGGTCTAAATCCAAATCTAATACCAGTTGGTATCCAAGTAGTAGTCCCTTTATTCTGTAGGTGCCCGTCAAAGAACCAGTTGGAAAAAGGGATAAAGTATCTGATTACTTATGTGTGGCAGCCCAATGACAATGTTTCCCTTGTAAGTGCCAAGTTTGGTGCATCCCCAGCGGACATATTGATTGAAAACAACTACGGTCAAAACTTCACTACTGCAACCAACCTTCCAGTTTTGATCCCAGTGACAGAGTTGCCATATCTTACTCAACCTCCTTCAGATGGAAGAAAAAGCAATACTAATCTTGCTGTTATAATTGGTATTACCCTGGGATGCACACTTCTGATTGCAGTTTTAACGGTATTTTTGGTGTATGTTTATTGTCTGAGAAAGAAGACTTTGAATAGGAGTGCTTCTTCGGCTGAGACTGCAGCAGATAAGCTACTTTCTGGAGTTTCAGGCTATGTAAGCAAGCCAACTGTGTATGAAATTGAAGCCCTCATGGAAGGTACCCTGAACCTCAGTGAACAATGCAAGATTGGGGAATCAGTGTACAAGGCCAATATAGAAGGTCGGGTTTTAGCAGTTAAAACATTCAAGGGAGAAGTCTCCGAGGAGCTGAAAATTCTGCAGAAGGTAAATCATGGAAATCTGGTGAAACTAATGGGTGTCTCTTCAGACAACGATGGAAACTGTTTCCTGGTTTATGAATATGCTGAAAATGGGTCTCTTGATGACTGGTTGTTCTCCAAGGCTTCGGACACCTCAAACTCAATGGCATTCCTTACATGGTCTCAGAGGATAAGCATAGCAGTGGATGTTGCCATGGGTCTGCAATACATGCATGAACACACTTTTCCAAGAATAGTCCATAGGGACATCACAACAAGTAATATCCTTCTTGACTCTAACTTTAAGGCCAAGATTGCAAATTTCTCCATGGCCAGAACTTCTACAAACCCTATGATGCCAAAAATAGATGTCTTTGCTTTTGGGGTGGTTCTGTTAGAGTTGCTTACTGGCAGGAAAGCCATAACAACCAAAGAAAATGGTGAGGTGGTTATGCTGTGGAAGGATATTTGGAAGATCTTTGATGTAGATCTAGAAGAGGATAGAGAGGAGGGTCTCAGAAGATGGATGGATCCTAAGTTAGACAGCTTTTATCCTATAGAACATGCTCTCAGTTTGGCCTCTTTGGCAGTGAATTGCACGGCAGATAAGTCTTTGTCTAGACCAACTATGGCAGAAATTGTTCTTAGCCTCTCCCTTCTCACTCATCCATCTCCAGGGACTTTAGAGAGATCCTTGAGTACTTCTGGGTTAGATGTAGAAGCTACTCAAATCGACATTTCCATAGCAGCTCGTTGA 1785 0.4196 MAVFVLLSLLLAQMLFFTKIAGQSQQTHGTKFSCPVDSPPSCETYVTYIAQSPNFLSLTNISDIFDTSPLSIARASNLGAEDDKLIPGQVLLVPVTCGCMGNHSFANISYEIKQGDSYSFVATTSYENLTNWQIVIALNPGLNPNLIPVGIQVVVPLFCRCPSKNQLEKGIKYLITYVWQPNDNVSLVSAKFGASPADILIENNYGQNFTTATNLPVLIPVTELPYLTQPPSDGRKSNTNLAVIIGITLGCTLLIAVLTVFLVYVYCLRKKTLNRSASSAETAADKLLSGVSGYVSKPTVYEIEALMEGTLNLSEQCKIGESVYKANIEGRVLAVKTFKGEVSEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDDWLFSKASDTSNSMAFLTWSQRISIAVDVAMGLQYMHEHTFPRIVHRDITTSNILLDSNFKAKIANFSMARTSTNPMMPKIDVFAFGVVLLELLTGRKAITTKENGEVVMLWKDIWKIFDVDLEEDREEGLRRWMDPKLDSFYPIEHALSLASLAVNCTADKSLSRPTMAEIVLSLSLLTHPSPGTLERSLSTSGLDVEATQIDISIAAR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00028 594 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 566 - -
Gabi3404g00028 594 ProSiteProfiles LysM domain profile. 46 93 IPR018392 -
Gabi3404g00028 594 Pfam LysM domain 57 94 IPR018392 -
Gabi3404g00028 594 Pfam LysM domain 110 156 IPR018392 -
Gabi3404g00028 594 Gene3D Transferase(Phosphotransferase) domain 1 460 570 - -
Gabi3404g00028 594 ProSitePatterns Tyrosine protein kinases specific active-site signature. 428 440 IPR008266 GO:0004672|GO:0006468
Gabi3404g00028 594 Gene3D Phosphorylase Kinase; domain 1 289 377 - -
Gabi3404g00028 594 SMART LysM_2 109 156 IPR018392 -
Gabi3404g00028 594 SMART LysM_2 47 94 IPR018392 -
Gabi3404g00028 594 Pfam Protein tyrosine and serine/threonine kinase 340 457 IPR001245 GO:0004672|GO:0006468
Gabi3404g00028 594 Gene3D Transferase(Phosphotransferase) domain 1 378 459 - -
Gabi3404g00028 594 ProSiteProfiles LysM domain profile. 108 155 IPR018392 -
Gabi3404g00028 594 ProSiteProfiles Protein kinase domain profile. 281 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3404g00028 594 Gene3D LysM domain 108 156 IPR036779 -
Gabi3404g00028 594 SUPERFAMILY Protein kinase-like (PK-like) 310 567 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00028 Gabi-Chr3404 338042 339826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3404g00028 81 563 Receptor kinase-like Gene Family AT3G21630 33.084 4.33e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3404g00028 PK_Tyr_Ser-Thr 3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00028 - - gmx:100301877 939.488