Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3404g00020 ATGGATTGGTTTGACAAGTTGCTTGAGGACACCAACCATGTAATTTCACGAGGACAATACCATGGCAGACACGGAGATGACAGAATTTGGGATAATCAATTTAGTTCAACGGCTGATGAATTGACGGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCTCTGGCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTCAGGATGATTATCTTTCTGAAGATGAACAACTTTGTATAATTGATGAGGAGGAGGATGAACATCTTGGTAAAGCTCACCTAGATGAAGATGAATATCTTGCTAAAATTAAACAGGTTGAAGATGAACATCGTGCTAAAGTTCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATTCAAGAGAGTTTGAACATTGGTTCTCCTCCTCGACATGACAATGATCCTTTATTTCAACCTTTTCCGCACTTCTTTCCACCTGGATGCAGAATTTGTGCTGGGTGCAACACTGAGATTGACCATGGAAGATTTTTAAGTTGCATGGGAGCAGTCTGGCACCCAAAATGCTTCCGCTGCCCTGCTTGCCATCTTCCAATTACTGATTCTGAGTTTTCCATGTTTGAAAATCGCCCTTACCATAAATCCTGCTACAGGGAGAAGCATCACGTAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGAGCTTGATGGTACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCACGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTCTAGAGTGTCTAGACTCAGCAATTATGGATACTCATGAATGCCAACCTTTGTACATTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCCAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTTAAGGAGACCAAGGATAGGGGCAGGCTACCGAGTCATGGACATGATAACTGAGCCTTACAGGCTGATCCGCCATTGCGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCCCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTTTATTCTGGATCTGGGAATGATGGTGTACCCTCATCATTGCCTTCCTCTTCTTCTGCTTCATCAAAGAAGGGTAAACGATCTGATTTTGAGAAGAAACTTGGTGAGTTTTTTAAACATCAAATTGAATCAGATACTTCATCAGCTTATGGAAATGGATTCAGATCGGGTAACAAGGCAACGCTTAAGTATGGGCTCAAAAGGACCCTTGACCATATCCAAATGACCGGAAGTTTTCCATATTGA 1569 0.4219 MDWFDKLLEDTNHVISRGQYHGRHGDDRIWDNQFSSTADELTDIEKEDIDRAIALSLAEEDQKGKKVIQDDYLSEDEQLCIIDEEEDEHLGKAHLDEDEYLAKIKQVEDEHRAKVQLEEDEQLARAIQESLNIGSPPRHDNDPLFQPFPHFFPPGCRICAGCNTEIDHGRFLSCMGAVWHPKCFRCPACHLPITDSEFSMFENRPYHKSCYREKHHVRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYIEIQEFYEGLNMKVEQPIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRVMDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNDGVPSSLPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGNGFRSGNKATLKYGLKRTLDHIQMTGSFPY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3404g00020 522 SMART uim 118 137 IPR003903 -
Gabi3404g00020 522 SMART uim 44 63 IPR003903 -
Gabi3404g00020 522 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 118 131 IPR003903 -
Gabi3404g00020 522 ProSiteProfiles LIM domain profile. 157 217 IPR001781 -
Gabi3404g00020 522 MobiDBLite consensus disorder prediction 448 464 - -
Gabi3404g00020 522 SMART lim_4 158 210 IPR001781 -
Gabi3404g00020 522 Pfam Protein DA1 308 517 IPR022087 -
Gabi3404g00020 522 PANTHER PROTEIN DA1-RELATED 2 3 522 IPR045218 -
Gabi3404g00020 522 Pfam LIM domain 159 214 IPR001781 -
Gabi3404g00020 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 184 - -
Gabi3404g00020 522 Gene3D Cysteine Rich Protein 156 218 - -
Gabi3404g00020 522 CDD LIM_DA1 159 211 - -
Gabi3404g00020 522 MobiDBLite consensus disorder prediction 448 468 - -
Gabi3404g00020 522 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3404g00020 Gabi-Chr3404 191012 200682 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3404g00020 DA1-like 5.6e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3404g00020 - - gmx:100817969 899.042